View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_278 (Length: 260)
Name: NF9288A_low_278
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_278 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 49166116 - 49165867
Alignment:
| Q |
11 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
110 |
Q |
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| T |
49166116 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
49166017 |
T |
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| Q |
111 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgaaacattgcagtcgtctttttgggacccaagtactt |
210 |
Q |
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| T |
49166016 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
49165917 |
T |
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| Q |
211 |
gctcgagaatggatttcgtacacgctgcgcaaattagtgtttcttttaca |
260 |
Q |
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| T |
49165916 |
gctcgagaatgaatttcgtacacgctgcgcaaattagtgtttcttttaca |
49165867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 43752543 - 43752422
Alignment:
| Q |
12 |
catcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcacccaa |
111 |
Q |
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|||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||| |
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| T |
43752543 |
catcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacctgtactcaa |
43752444 |
T |
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| Q |
112 |
ctttgttgctggttcggatgga |
133 |
Q |
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||| |||| |||||||||||| |
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| T |
43752443 |
cttggttgacggttcggatgga |
43752422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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