View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_28 (Length: 438)

Name: NF9288A_low_28
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_28
NF9288A_low_28
[»] chr3 (14 HSPs)
chr3 (3-432)||(5484450-5484877)
chr3 (4-250)||(5525676-5525920)
chr3 (3-190)||(5828156-5828344)
chr3 (3-192)||(5502897-5503084)
chr3 (3-192)||(5490083-5490271)
chr3 (3-190)||(5454907-5455094)
chr3 (3-188)||(20343528-20343714)
chr3 (3-168)||(5854186-5854351)
chr3 (21-192)||(5446346-5446517)
chr3 (3-121)||(5848885-5849003)
chr3 (3-122)||(5802488-5802607)
chr3 (244-308)||(5525588-5525652)
chr3 (370-430)||(5525497-5525557)
chr3 (364-432)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (21-192)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 3 - 432
Target Start/End: Complemental strand, 5484877 - 5484450
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| |||||||||||||||||||    
T  5484877 atcagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcat 5484778  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  5484777 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctg 5484680  T
Q  203 gtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484679 gtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaa 5484580  T
Q  303 aaacataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaact 402  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  5484579 aaacataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacct 5484480  T
Q  403 acagatcatataaagaatacgagaaacttg 432  Q
    ||||||||||||||||||||||||||||||    
T  5484479 acagatcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 5525920 - 5525676
Alignment:
Q  4 tcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatc 103  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  |||||||    
T  5525920 tcagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatc 5525821  T
Q  104 ttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactgg 203  Q
    |||||||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  5525820 ttcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactgg 5525723  T
Q  204 tactgataccttaactgtttaattaataggaaaagattacaaaacat 250  Q
     |||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5525722 cactgctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 5828156 - 5828344
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||    
T  5828156 atcagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcat 5828255  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 190  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828256 cttccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 5503084 - 5502897
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  5503084 atcagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcat 5502985  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 192  Q
    ||||||| |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502984 cttcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 5490271 - 5490083
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    |||| |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||    
T  5490271 atcaaagatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcat 5490172  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 192  Q
    |||||||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490171 cttcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 5455094 - 5454907
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    |||||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||    
T  5455094 atcagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcat 5454995  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 190  Q
    |||||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454994 cttcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 20343714 - 20343528
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||||||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| ||||    
T  20343714 atcagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcat 20343615  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 188  Q
    |||||||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343614 cttcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

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Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 5854186 - 5854351
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    |||||| ||| ||| || ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||    
T  5854186 atcagatatgttggaagtggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcat 5854285  T
Q  103 cttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaa 168  Q
    |||||||||||||||||| ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854286 cttcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  21 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 120  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  121 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 192  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

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Target: chr3; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5848885 - 5849003
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||    
T  5848885 atcagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcat 5848984  T
Q  103 cttcagaacttggtatttt 121  Q
    |||||||||| ||||||||    
T  5848985 cttcagaactcggtatttt 5849003  T

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Target: chr3; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 5802488 - 5802607
Alignment:
Q  3 atcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcat 102  Q
    ||||| |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||    
T  5802488 atcagggatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcat 5802587  T
Q  103 cttcagaacttggtattttc 122  Q
    ||||||||||||||||||||    
T  5802588 cttcagaacttggtattttc 5802607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  244 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 308  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  370 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 430  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  364 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 432  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  21 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 120  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  121 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 192  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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