View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_281 (Length: 258)
Name: NF9288A_low_281
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_281 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 38322595 - 38322848
Alignment:
| Q |
5 |
ctccaacaatatgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactaaatggtcaatgtaatcatatttatgaac |
104 |
Q |
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| T |
38322595 |
ctccaacaaaatgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactatatggtcaatgtaatcatatttatgaac |
38322694 |
T |
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| Q |
105 |
ttatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtgatgctcaaata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38322695 |
ttatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtaatgctcaaata |
38322794 |
T |
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| Q |
205 |
aatgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaa |
258 |
Q |
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| T |
38322795 |
aatgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaa |
38322848 |
T |
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