View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_29 (Length: 437)
Name: NF9288A_low_29
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 27311414 - 27311070
Alignment:
| Q |
1 |
taaagttttatacttttgtgtaatgcatatgttttgtttttctgtatgtttgatattactgtgtatacgtcaaagtcaaaatcacggtgatttaccatga |
100 |
Q |
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| T |
27311414 |
taaagttttctacttttgtgtaatgcatatgttttgtttttctgtatgtttgatattactgtgtatacgtcaga------atcacggtgatttatcatg- |
27311322 |
T |
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| Q |
101 |
nnnnnnnnnnnnactacaaagtgtagcttttgaaaaatcacgctccctcatcgtgattttgacgtgccaacttgatatcaaacatttatgtttatgttgt |
200 |
Q |
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| T |
27311321 |
gtttttatttttactacaaagtgtagcttttgaaaaatcaccctcggtcatcgtgattttgacgtaccaacttgatatcaaacatttatgtttatgttgt |
27311222 |
T |
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| Q |
201 |
gtatttgttgaattctgcaaattcatcctttttaattttcttgaatgttaaaacttttaaattctgtgttttttggtggtgataagttgaattgtgcaaa |
300 |
Q |
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| T |
27311221 |
gtatttgttgaattctgcaaattcatcctttttaattttcttgaatgttaaaacttttaaattctgcattttttggtggtgataagttgaattgtgcaaa |
27311122 |
T |
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| Q |
301 |
ccttaaaaagtaagatcatgataattttgaatttctgtgttgttttattgta |
352 |
Q |
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| T |
27311121 |
ccttaaaaagtaagatcatgataattttgaatttctgtgttgttttattgta |
27311070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 27310875 - 27310794
Alignment:
| Q |
344 |
tttattgtaataatagtggggatctttaattaaatgaaggagcctttatagtggatattcatcaatttatagtgctaatatt |
425 |
Q |
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| T |
27310875 |
tttattgtaataatagtggggatctttaattaaatgaaggagcctttatagtggatattcatcaatttatagtgctaatatt |
27310794 |
T |
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