View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_297 (Length: 254)
Name: NF9288A_low_297
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_297 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 41311027 - 41311253
Alignment:
| Q |
28 |
attgtgtattcctgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
127 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
128 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
|
| Q |
228 |
aatcagccaatgaatagacccattcaa |
254 |
Q |
| |
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|| ||||||||||||||| |||||||| |
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| T |
41311227 |
aaccagccaatgaatagaaccattcaa |
41311253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 43164710 - 43164931
Alignment:
| Q |
33 |
gtattcctgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
132 |
Q |
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|||||| ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
133 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
232 |
Q |
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|||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
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| Q |
233 |
gccaatgaatagacccattcaa |
254 |
Q |
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||||||||||||| |||||||| |
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| T |
43164910 |
gccaatgaatagaaccattcaa |
43164931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 30165883 - 30165677
Alignment:
| Q |
33 |
gtattcctgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
132 |
Q |
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|||||| ||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
133 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
232 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
|
| Q |
233 |
gccaatgaatagacccatt |
251 |
Q |
| |
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||||||||||||| ||||| |
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| T |
30165695 |
gccaatgaatagaaccatt |
30165677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 28180965 - 28181079
Alignment:
| Q |
131 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat |
230 |
Q |
| |
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|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||| |||| || || ||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
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| Q |
231 |
cagccaatgaataga |
245 |
Q |
| |
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||||||||||||||| |
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| T |
28181065 |
cagccaatgaataga |
28181079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 30124981 - 30125207
Alignment:
| Q |
28 |
attgtgtattcctgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
127 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
|
| Q |
128 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
227 |
Q |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| | | |||| || || || |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg |
30125180 |
T |
|
| Q |
228 |
aatcagccaatgaatagacccattcaa |
254 |
Q |
| |
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|| |||||||||||||| ||||||||| |
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| T |
30125181 |
aaccagccaatgaatagtcccattcaa |
30125207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 30131068 - 30131161
Alignment:
| Q |
161 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagacccattcaa |
254 |
Q |
| |
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||||||||| ||||||||||||||||| |||||| |||||||||||| || |||| || || ||||| |||||||||||||| ||||||||| |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaa |
30131161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 30120068 - 30120161
Alignment:
| Q |
161 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagacccattcaa |
254 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||| ||| | |||| || || || || || ||||||||||| ||||||||| |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaa |
30120161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
146 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
207 |
Q |
| |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
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|
| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
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