View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_3 (Length: 828)
Name: NF9288A_low_3
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 728; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 18 - 802
Target Start/End: Complemental strand, 48585945 - 48585161
Alignment:
| Q |
18 |
cactcaataaataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccctcttgttgga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48585945 |
cactcaataaataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgga |
48585846 |
T |
|
| Q |
118 |
ctaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585845 |
ctaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaat |
48585746 |
T |
|
| Q |
218 |
tagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585745 |
tagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgc |
48585646 |
T |
|
| Q |
318 |
tgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnn |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585645 |
tgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattattttttt |
48585546 |
T |
|
| Q |
418 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585545 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
48585446 |
T |
|
| Q |
518 |
aattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585445 |
aattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcc |
48585346 |
T |
|
| Q |
618 |
tttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagag |
717 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585345 |
tttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagag |
48585246 |
T |
|
| Q |
718 |
catgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggag |
802 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585245 |
catgaattcatagattatatttcgaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggag |
48585161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 41 - 796
Target Start/End: Complemental strand, 48640495 - 48639740
Alignment:
| Q |
41 |
aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48640495 |
aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa |
48640396 |
T |
|
| Q |
141 |
gggggccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt |
240 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48640395 |
gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt |
48640296 |
T |
|
| Q |
241 |
actttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagac |
340 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
48640295 |
actttcgctttcgagttctttgacgatggtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagac |
48640196 |
T |
|
| Q |
341 |
cctctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaa |
440 |
Q |
| |
|
|| |||||| ||||| || ||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
48640195 |
actttatttcacaaatgataaagaatcatgccgattcaaacaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttgctaa |
48640096 |
T |
|
| Q |
441 |
tgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaat |
540 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48640095 |
tgaacacaatattccttctgttttgtcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacatctttccctacaaat |
48639996 |
T |
|
| Q |
541 |
gaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctag |
640 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | |||||||||| ||||||||||| |||| |
|
|
| T |
48639995 |
gaagaaccttatattgatgttcaactcaattcttctatagttcttaaatacaatgaaatctcagactttatacatccttttttcccatttccatttctag |
48639896 |
T |
|
| Q |
641 |
gtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc |
740 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
48639895 |
gtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttc |
48639796 |
T |
|
| Q |
741 |
caaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaa |
796 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| ||||| ||||||||||||| |
|
|
| T |
48639795 |
aaaaaaatcaatcaccataagacctattggtccttcgtttaagaatccaaatgcaa |
48639740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 345 - 802
Target Start/End: Complemental strand, 48667438 - 48666981
Alignment:
| Q |
345 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
444 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
|
|
| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
445 |
cacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag |
544 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| |||||||||||||| || |||| | |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag |
48667239 |
T |
|
| Q |
545 |
aaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaa |
644 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| || | |||||||||||| || |||| | ||||| | |
|
|
| T |
48667238 |
aaccttatattgatgttcaactcaactcttctatagttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggac |
48667139 |
T |
|
| Q |
645 |
actcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaa |
744 |
Q |
| |
|
|||| | | | || | |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| || |
|
|
| T |
48667138 |
actcaccacggcacagataaaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaa |
48667039 |
T |
|
| Q |
745 |
aaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggag |
802 |
Q |
| |
|
||||||||| |||||||| | |||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
48667038 |
aaatcaatcgccataagacccgttggtcctttgtttaaaaatccaaaggcaaacggag |
48666981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 347 - 802
Target Start/End: Complemental strand, 48661841 - 48661386
Alignment:
| Q |
347 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
446 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
|
|
| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
447 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
546 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa |
48661642 |
T |
|
| Q |
547 |
ccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
646 |
Q |
| |
|
||||| |||||||||||||||| | |||||| ||||||||||||||| |||||| ||||| | | ||||||||| |||||||||| | ||||| | || |
|
|
| T |
48661641 |
ccttacattgatgttcaactcaactcttctatagttcttaaatacaacgaaatcccagattatatacatccttttaatccatttccaattctagggacac |
48661542 |
T |
|
| Q |
647 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
746 |
Q |
| |
|
| | | | | | |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| ||||| |
|
|
| T |
48661541 |
ttaccacggcacaaataaaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaa |
48661442 |
T |
|
| Q |
747 |
atcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggag |
802 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
48661441 |
atcaatcaccataagacatgttggtcctttgtttaagaatccaaaggcaaatggag |
48661386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 347 - 752
Target Start/End: Original strand, 48618046 - 48618448
Alignment:
| Q |
347 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
446 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
447 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
546 |
Q |
| |
|
||||||||||| ||| | ||||| | | || |||||||||| | |||||||||||||| |||||||| | || ||||||| || | |||| |
|
|
| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaactggtacgtttcccttcacaaacagaa |
48618245 |
T |
|
| Q |
547 |
ccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
646 |
Q |
| |
|
|||||||||||||||||| | |||| | |||||||||||||||||||||| ||||| || | ||||||||| ||| ||||||||| ||||| | || |
|
|
| T |
48618246 |
ccttatattgatgttcaatta---ccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacac |
48618342 |
T |
|
| Q |
647 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
746 |
Q |
| |
|
|| |||||||| |||||||| | ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| ||||| |
|
|
| T |
48618343 |
tcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaa |
48618442 |
T |
|
| Q |
747 |
atcaat |
752 |
Q |
| |
|
| |||| |
|
|
| T |
48618443 |
aacaat |
48618448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 347 - 762
Target Start/End: Complemental strand, 48653409 - 48652997
Alignment:
| Q |
347 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
446 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
|
|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
447 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
546 |
Q |
| |
|
||||||||||||||||| |||| | | ||| | |||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||| |
|
|
| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa |
48653210 |
T |
|
| Q |
547 |
ccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
646 |
Q |
| |
|
|||||||||||||||||| | |||| | |||||||||| | ||||||||| ||||| || ||||||||||| || |||||| || | || | || |
|
|
| T |
48653209 |
ccttatattgatgttcaatta---ccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggacac |
48653113 |
T |
|
| Q |
647 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
746 |
Q |
| |
|
||||||||||| | ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| || || |
|
|
| T |
48653112 |
tcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaa |
48653013 |
T |
|
| Q |
747 |
atcaatccccataaga |
762 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
48653012 |
atcaatcctcataaga |
48652997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 349 - 792
Target Start/End: Complemental strand, 11547518 - 11547078
Alignment:
| Q |
349 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
448 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
449 |
atattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaacc |
548 |
Q |
| |
|
||||||||||||||||| |||| | | ||| |||| ||||| | |||||||||||||| || ||||| | || ||| ||| | ||||||| |
|
|
| T |
11547418 |
gtattccttctgttttattatgggttcaatccactgcagtttttgctgcttactataactatttcaacaaactggtacattttcctttggaaaaagaacc |
11547319 |
T |
|
| Q |
549 |
ttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaactc |
648 |
Q |
| |
|
|||||||||||||||| | |||| | ||| |||||||||||||||||| ||||| || | ||||||||| |||||| |||||| ||||| | |||| |
|
|
| T |
11547318 |
ttatattgatgttcaatta---ccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactc |
11547222 |
T |
|
| Q |
649 |
gtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaat |
748 |
Q |
| |
|
|||||||| |||||||| | || ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||| || ||| || | ||||||| |
|
|
| T |
11547221 |
atcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaat |
11547122 |
T |
|
| Q |
749 |
caatccccataagaactgttggtccttcatttaaaaatccaaat |
792 |
Q |
| |
|
| |||| ||||||| || ||||||| | ||||||||||||||| |
|
|
| T |
11547121 |
ccatccacataagacctattggtccattgtttaaaaatccaaat |
11547078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 347 - 750
Target Start/End: Complemental strand, 48629155 - 48628755
Alignment:
| Q |
347 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
446 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
447 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
546 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||| || | |||| |
|
|
| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaacttgtaccttttccttcagaaacagaa |
48628956 |
T |
|
| Q |
547 |
ccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
646 |
Q |
| |
|
||||||||||||||||| | |||| || ||| |||||||||||||||||| ||||| | ||||||||| ||| | |||| | ||||| | || |
|
|
| T |
48628955 |
ccttatattgatgttcatttg---ccttttatagtccttaaatacaatgaaatcccagatttaacacatccttttaatccctatccaattctagggacac |
48628859 |
T |
|
| Q |
647 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
746 |
Q |
| |
|
|| || | | | || ||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
48628858 |
tcatcacgtcacatatgaataacttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaa |
48628759 |
T |
|
| Q |
747 |
atca |
750 |
Q |
| |
|
|||| |
|
|
| T |
48628758 |
atca |
48628755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 48662100 - 48661896
Alignment:
| Q |
70 |
ctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacag |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| || ||| |||| || ||||||||||||| |
|
|
| T |
48662100 |
ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacag |
48662001 |
T |
|
| Q |
170 |
agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg |
269 |
Q |
| |
|
||| ||||||||| ||||| || || | || |||||| |||||||||||||||| || ||||||||| || || |||||||||||||||| || | |
|
|
| T |
48662000 |
agaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatag |
48661901 |
T |
|
| Q |
270 |
tttac |
274 |
Q |
| |
|
||||| |
|
|
| T |
48661900 |
tttac |
48661896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 48617776 - 48617972
Alignment:
| Q |
77 |
tctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacagagacggc |
176 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| || |||| ||||||| ||||||||||| || |
|
|
| T |
48617776 |
tctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagc |
48617875 |
T |
|
| Q |
177 |
tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
273 |
Q |
| |
|
||||||| |||| || ||| |||||| |||||||| |||| | ||| |||||||||||||| || | |||| |||||||| |||||||||||| |
|
|
| T |
48617876 |
tggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatgatggttta |
48617972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 11547790 - 11547593
Alignment:
| Q |
77 |
tctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacagagacggc |
176 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || || ||| ||||| ||||||||||||||| || |||| ||||||| ||||||| ||| || |
|
|
| T |
11547790 |
tctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagc |
11547691 |
T |
|
| Q |
177 |
tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
274 |
Q |
| |
|
||||||| |||| | | | | |||||||||| |||| |||| || || |||| ||| ||||| || || |||| |||||||||||||||||||||| |
|
|
| T |
11547690 |
tggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatggtttac |
11547593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 48629401 - 48629282
Alignment:
| Q |
73 |
cttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacagaga |
172 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||| ||| |||| ||||| || |||||||||| |
|
|
| T |
48629401 |
cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga |
48629302 |
T |
|
| Q |
173 |
cggctggcaaaaacatgcga |
192 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
48629301 |
aagcaggcaaagacatgcga |
48629282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 48667689 - 48667567
Alignment:
| Q |
70 |
ctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacag |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||||| || |||| ||||||| |||||||| |
|
|
| T |
48667689 |
ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag |
48667590 |
T |
|
| Q |
170 |
agacggctggcaaaaacatgcga |
192 |
Q |
| |
|
| | | ||||||||| |||||| |
|
|
| T |
48667589 |
aaaaaggtggcaaaaatatgcga |
48667567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 70 - 273
Target Start/End: Complemental strand, 48653686 - 48653483
Alignment:
| Q |
70 |
ctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacag |
169 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| || ||| | || | |||| ||||| | ||||||||||||| || |||| || |||| |||||||| |
|
|
| T |
48653686 |
ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatcacaacag |
48653587 |
T |
|
| Q |
170 |
agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg |
269 |
Q |
| |
|
| | ||||| ||| |||| || ||| ||||||||||||||| |||| | |||||||||||||||||| | || |||| ||||||||||||||| | |
|
|
| T |
48653586 |
aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattg |
48653487 |
T |
|
| Q |
270 |
ttta |
273 |
Q |
| |
|
|||| |
|
|
| T |
48653486 |
ttta |
48653483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 48657152 - 48656998
Alignment:
| Q |
52 |
gaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactg |
151 |
Q |
| |
|
|||| ||||||| || |||||||||| |||| ||| || | ||||| |||||| ||||| || |||||| |||| ||||||||||||||| | ||| |
|
|
| T |
48657152 |
gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg |
48657053 |
T |
|
| Q |
152 |
ttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
206 |
Q |
| |
|
| |||||||||||||| ||| ||||||||| ||||| | ||||||||||||| |
|
|
| T |
48657052 |
tcatcttcaccacaacgcagaaagctggcaaagacatggaaactgctaacaacat |
48656998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 762
Target Start/End: Complemental strand, 48656537 - 48656445
Alignment:
| Q |
670 |
ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataaga |
762 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||||||| ||| || || |||||| |||| |||| |||||| ||||||| |
|
|
| T |
48656537 |
ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataaga |
48656445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 70 - 273
Target Start/End: Original strand, 19665125 - 19665328
Alignment:
| Q |
70 |
ctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaacag |
169 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| | | || ||||||| ||| |||| |
|
|
| T |
19665125 |
ctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacag |
19665224 |
T |
|
| Q |
170 |
agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg |
269 |
Q |
| |
|
||| ||||||||| |||||| | ||| ||||||||||| | |||||| | |||||||| ||||||||| || || |||| | |||||||||||||| |
|
|
| T |
19665225 |
agaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatgg |
19665324 |
T |
|
| Q |
270 |
ttta |
273 |
Q |
| |
|
|||| |
|
|
| T |
19665325 |
ttta |
19665328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 652 - 754
Target Start/End: Original strand, 19665704 - 19665806
Alignment:
| Q |
652 |
ttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaa |
751 |
Q |
| |
|
|||||| |||||||| | || |||||||||||||||||||| ||||||| ||||| |||||||||||||| | ||| || ||| |||| |||||||||| |
|
|
| T |
19665704 |
ttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaaatcaa |
19665803 |
T |
|
| Q |
752 |
tcc |
754 |
Q |
| |
|
||| |
|
|
| T |
19665804 |
tcc |
19665806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 510
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
| Q |
347 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
446 |
Q |
| |
|
|||||||||| || ||||||||| ||| | ||||||||| |||| || |||||||||||| ||||||||||||||||| ||| | |||| |
|
|
| T |
19665402 |
tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca |
19665501 |
T |
|
| Q |
447 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactat |
510 |
Q |
| |
|
|||||||||||| ||| | ||||| | | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
19665502 |
tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat |
19665565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 25892445 - 25892613
Alignment:
| Q |
39 |
aaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccctcttgttggact-aggaaagtatcttgctgc |
137 |
Q |
| |
|
||||||| || || |||||||||||||||| |||||||||||||||||| ||| ||||| |||||| |||| |||| || |||||| | ||||||||| |
|
|
| T |
25892445 |
aaaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgc |
25892544 |
T |
|
| Q |
138 |
aaagggggccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
206 |
Q |
| |
|
|| ||| || || | ||||||||||||||||| || || |||| |||||||||| |||||||||||| |
|
|
| T |
25892545 |
aaggggtgcatctatcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat |
25892613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 418 - 740
Target Start/End: Complemental strand, 27228385 - 27228066
Alignment:
| Q |
418 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
517 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| ||||| | | |||| |||||||||| | |||||||||||||| | |||| |
|
|
| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
518 |
aattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcc |
617 |
Q |
| |
|
|| | || ||||||| | |||| |||||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||||| | | ||| |
|
|
| T |
27228285 |
aactggtacgtttcccttcgaatgcagaaccttatattgatgttcaattgt---cttctctagtccttaaatacaatgaaataccagatttccttcattg |
27228189 |
T |
|
| Q |
618 |
tttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagag |
717 |
Q |
| |
|
|||| || | |||||| || || |||| | || ||| || ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || |
|
|
| T |
27228188 |
ttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaa |
27228089 |
T |
|
| Q |
718 |
catgaattcatagattatctttc |
740 |
Q |
| |
|
||||| |||||| ||||| |||| |
|
|
| T |
27228088 |
catgatttcataaattatatttc |
27228066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 27224538 - 27224328
Alignment:
| Q |
68 |
ttctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaac |
167 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||| ||| | || |||||||||||| |||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
27224538 |
ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac |
27224439 |
T |
|
| Q |
168 |
agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat |
267 |
Q |
| |
|
||||| ||||||||| | || || ||| |||||| |||| ||| ||||||| | |||| ||||| ||||| || || | || ||||||||||||| |
|
|
| T |
27224438 |
agagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatgac |
27224339 |
T |
|
| Q |
268 |
ggtttaccaga |
278 |
Q |
| |
|
|||||| |||| |
|
|
| T |
27224338 |
ggtttatcaga |
27224328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 27228741 - 27228531
Alignment:
| Q |
68 |
ttctccttgtctcttttccagcacaaggacacataaaccctcttgttggactaggaaagtatcttgctgcaaagggggccactgttatcttcaccacaac |
167 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||| ||| | || || ||||||||| |||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
27228741 |
ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac |
27228642 |
T |
|
| Q |
168 |
agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat |
267 |
Q |
| |
|
|||| ||||||| | | || || ||| ||||||||||||||| |||| || | |||| ||||| ||||| || || | |||||||||||||| || |
|
|
| T |
27228641 |
tgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagac |
27228542 |
T |
|
| Q |
268 |
ggtttaccaga |
278 |
Q |
| |
|
|||||| |||| |
|
|
| T |
27228541 |
ggtttatcaga |
27228531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 785
Target Start/End: Complemental strand, 27223953 - 27223830
Alignment:
| Q |
662 |
ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataag |
761 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||| |||| ||||| ||| || ||||| |
|
|
| T |
27223953 |
ttaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaaataag |
27223854 |
T |
|
| Q |
762 |
aactgttggtccttcatttaaaaa |
785 |
Q |
| |
|
| || ||||||||| |||||||| |
|
|
| T |
27223853 |
acctattggtcctttgtttaaaaa |
27223830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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