View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_311 (Length: 251)
Name: NF9288A_low_311
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_311 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 50247965 - 50247735
Alignment:
| Q |
20 |
catcagatgtatgtgttgagttgcttgaattttcgtcaacaaattgagagcttctcatacgcagtatttacggtattatttgaacgtttctatttagaat |
119 |
Q |
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| T |
50247965 |
catcagatgtatgtgttgagttggttgaattttcgtcaacaaattgagagtttctcatacgcagtatttacagtattatttgaatgtttctatctagaat |
50247866 |
T |
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| Q |
120 |
tagaattttgaatcattccaatctcaaatgtgagcttcgatataaaaaccaaaaagaataatgtttgaatcaattttaggagaagcataagtaatgtttg |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50247865 |
tagaatttagaatcattccaatctcaaatgtgagcttcgatataagaaccaaaaaaaacaatgtttgaatcaatgttaggagaagcataagtaatgtttg |
50247766 |
T |
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| Q |
220 |
tcggcctcaagtcaataaagtataatgtcta |
250 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50247765 |
tcggcctcaagtcaataaagtataatgtcta |
50247735 |
T |
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