View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_316 (Length: 251)
Name: NF9288A_low_316
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_316 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35742834 - 35742596
Alignment:
| Q |
1 |
ttgaagattactatgatctcgaagatcacgaagatccagtaacttataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttgg |
100 |
Q |
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| T |
35742834 |
ttgaagagtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttgg |
35742735 |
T |
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| Q |
101 |
tcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagctt |
200 |
Q |
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| T |
35742734 |
tcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagctt |
35742635 |
T |
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| Q |
201 |
gtgaaccacgaaacacatcccgatcaaatgctatatatt |
239 |
Q |
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| T |
35742634 |
gtgaaccacgaaacacatcccgatcaaatgctatatatt |
35742596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 35749153 - 35748963
Alignment:
| Q |
47 |
taaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacac |
146 |
Q |
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| T |
35749153 |
taaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattc |
35749054 |
T |
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| Q |
147 |
ctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatata |
237 |
Q |
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| T |
35749053 |
ctcagtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
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