View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_317 (Length: 251)
Name: NF9288A_low_317
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_317 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 3016176 - 3015933
Alignment:
| Q |
8 |
tatcatagatgatggatttgtcagcattttgtgattgtcttagagttagattatcatttttaagatcttacatattaatattcttctaccattgtaagta |
107 |
Q |
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| T |
3016176 |
tatcatagatgatggatttgtcagcattttatgattgtcttagagttagattatcatttttaagatcatacatatcaatattcgtctaccgttgtaagta |
3016077 |
T |
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| Q |
108 |
aacaggcttgaggaataaaaagagaaaattgaagggggnnnnnnngctgatcaagattacagaaatcttgtgtcaactttctattacaatgttgtcatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016076 |
aacaggcttgaggaataaaaagagaaaattgaagggggaaaaaaagctgatcaagattacagaaatcttgtgtcaactttctattacaatgttgtcatgt |
3015977 |
T |
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| Q |
208 |
ttgaacttgttctcactattattacaattccatggaaatccaaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3015976 |
ttgaacttgttctcactattattacaattccatggagatccaaa |
3015933 |
T |
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