View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_318 (Length: 250)

Name: NF9288A_low_318
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_318
NF9288A_low_318
[»] chr7 (6 HSPs)
chr7 (1-238)||(3237434-3237677)
chr7 (126-183)||(21164765-21164822)
chr7 (109-167)||(12653335-12653393)
chr7 (120-174)||(44941414-44941468)
chr7 (122-170)||(3337272-3337320)
chr7 (109-185)||(40187626-40187702)
[»] chr1 (8 HSPs)
chr1 (109-183)||(44068853-44068927)
chr1 (141-181)||(45885317-45885357)
chr1 (134-185)||(48131243-48131294)
chr1 (111-181)||(19396183-19396253)
chr1 (116-158)||(34599916-34599958)
chr1 (133-185)||(30678827-30678879)
chr1 (110-174)||(31962453-31962517)
chr1 (109-185)||(33153870-33153946)
[»] chr2 (4 HSPs)
chr2 (132-186)||(41939121-41939175)
chr2 (109-174)||(40797370-40797435)
chr2 (132-183)||(34364508-34364559)
chr2 (112-186)||(20239337-20239411)
[»] scaffold0161 (1 HSPs)
scaffold0161 (109-174)||(26704-26769)
[»] chr8 (2 HSPs)
chr8 (111-167)||(13958824-13958880)
chr8 (109-161)||(7839108-7839160)
[»] chr5 (6 HSPs)
chr5 (113-185)||(1512850-1512922)
chr5 (109-185)||(3156529-3156605)
chr5 (109-185)||(10199014-10199090)
chr5 (111-186)||(11017170-11017245)
chr5 (144-181)||(2642788-2642825)
chr5 (132-185)||(20370143-20370196)
[»] chr6 (3 HSPs)
chr6 (142-185)||(7979746-7979789)
chr6 (120-185)||(16890449-16890514)
chr6 (109-157)||(35110077-35110125)
[»] chr3 (2 HSPs)
chr3 (111-169)||(41113187-41113245)
chr3 (117-185)||(48376830-48376898)
[»] scaffold0445 (1 HSPs)
scaffold0445 (109-186)||(4464-4541)
[»] chr4 (2 HSPs)
chr4 (144-185)||(20096295-20096336)
chr4 (144-185)||(41897578-41897619)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3237434 - 3237677
Alignment:
Q  1 gttagcatttctttaattatgcgtttctctcgaaagtgtatataaataattgtttctctttggtttgtcgttcacgatattgagctcaagatttactctt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3237434 gttagcatttctttaattatgtgtttctctcgaaagtgtatataaataattgtttctctttggtctgtcgttcacgatattgagctcaagatttactctt 3237533  T
Q  101 cnnnnnnn------gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggattactcaaa 194  Q
                  |||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  3237534 ttttctttttttttgtggtgttcgggattcgaacctcagaccttacatttattatgcattatctctgccaactgagttaatctcacggggattactcaaa 3237633  T
Q  195 gtttactctttcaatagggttaagaacccctctcaatatatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3237634 gtttactctttcaatagggttaagaacccctctcaatatatatt 3237677  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 21164765 - 21164822
Alignment:
Q  126 aaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 183  Q
    ||||| ||||||||||| ||||||||||||||| | |||||| |||||| ||||||||    
T  21164765 aacctcaaaccttatatatattatgcattatccataccaactgagttaagctcacgag 21164822  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 12653393 - 12653335
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaact 167  Q
    ||||||| ||| |||| ||||  |||||||  |||||||||||||||||||||||||||    
T  12653393 gtggtgtccggaattcaaaccccaaaccttgcatttattatgcattatccctgccaact 12653335  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 44941414 - 44941468
Alignment:
Q  120 gattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 174  Q
    |||| ||||||||||||||  || ||||||||||||||||| |||||| ||||||    
T  44941414 gatttgaaccttaaaccttgcatatattatgcattatccctaccaactgagttaa 44941468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 3337272 - 3337320
Alignment:
Q  122 ttcgaaccttaaaccttatatttattatgcattatccctgccaactaag 170  Q
    |||||||||| ||||||| |||||||||||||| || || |||||||||    
T  3337272 ttcgaaccttgaaccttacatttattatgcattgtctctaccaactaag 3337320  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 40187626 - 40187702
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||||||||| || |||||  | |||||| || ||||||||||| ||||| |||||| |||||| |||| |||||    
T  40187626 gtggtgttcggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctcatgagga 40187702  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 44068927 - 44068853
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 183  Q
    ||||||| |||||||||||||| |||| ||| || |||||||||||||| || ||||||||||||| ||||||||    
T  44068927 gtggtgtccgggattcgaacctcaaacattaaatgtattatgcattatctctaccaactaagttaagctcacgag 44068853  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 45885317 - 45885357
Alignment:
Q  141 atttattatgcattatccctgccaactaagttaatctcacg 181  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  45885317 atttattatgcattatccttgccaactaagttaaactcacg 45885357  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 48131243 - 48131294
Alignment:
Q  134 accttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||| || |||||||||||||| ||||||||| |||||| ||||||||||    
T  48131243 accttacatatattatgcattatctctgccaactgagttaaactcacgagga 48131294  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 19396183 - 19396253
Alignment:
Q  111 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacg 181  Q
    ||||| |||||||| ||| | |||||||  || ||||||||||||||||| |||||| |||||| ||||||    
T  19396183 ggtgtccgggattcaaacatcaaaccttgcatatattatgcattatccctaccaactgagttaaactcacg 19396253  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 34599916 - 34599958
Alignment:
Q  116 tcgggattcgaaccttaaaccttatatttattatgcattatcc 158  Q
    ||||||||||||||  ||||||||||| |||||||||||||||    
T  34599916 tcgggattcgaaccccaaaccttatatatattatgcattatcc 34599958  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 30678827 - 30678879
Alignment:
Q  133 aaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    ||||||| || ||||||||||| ||||| |||||| |||||| ||||||||||    
T  30678827 aaccttacatatattatgcattgtccctaccaactgagttaagctcacgagga 30678879  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 31962517 - 31962453
Alignment:
Q  110 tggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 174  Q
    ||||| |||||||||||||| || || ||| || ||||||||||| ||| | |||||||||||||    
T  31962517 tggtggtcgggattcgaaccctagactttacatatattatgcattgtccttaccaactaagttaa 31962453  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 33153870 - 33153946
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||||||||| || ||||||   |||||| || ||||||||||| ||||| |||||| |||||| ||||| ||||    
T  33153870 gtggtgttcggggtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcacaagga 33153946  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 41939121 - 41939175
Alignment:
Q  132 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 186  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| |||||||||||    
T  41939121 aaaccttacatatattatgcattatccctaccaactaagctaagctcacgaggat 41939175  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 40797435 - 40797370
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 174  Q
    ||||||||||| |||||||||||| ||||| ||| ||||||||||| ||| | |||| ||||||||    
T  40797435 gtggtgttcggaattcgaaccttagaccttgtatatattatgcattgtccttaccaattaagttaa 40797370  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 34364508 - 34364559
Alignment:
Q  132 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 183  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  34364508 aaaccttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 20239411 - 20239337
Alignment:
Q  112 gtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 186  Q
    |||| |||||||||||||||| |||||  || |||||||||||||||||  ||| | |||||| |||||| ||||    
T  20239411 gtgtccgggattcgaaccttagaccttgcatatattatgcattatccctatcaattgagttaagctcacgcggat 20239337  T

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Target: scaffold0161 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26769 - 26704
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 174  Q
    ||||||| || |||| |||| ||||||||||||| |||||||||||||||||  ||||| ||||||    
T  26769 gtggtgtccgagatttgaactttaaaccttatatatattatgcattatccctaacaactgagttaa 26704  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 13958880 - 13958824
Alignment:
Q  111 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaact 167  Q
    |||||||||||||||||||  |||||||| || |||||||||||||  |||||||||    
T  13958880 ggtgttcgggattcgaaccccaaaccttacatatattatgcattatatctgccaact 13958824  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 7839108 - 7839160
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctg 161  Q
    |||||||||||||||||||||  | |||||  || ||||||||||||||||||    
T  7839108 gtggtgttcgggattcgaaccccataccttgcatatattatgcattatccctg 7839160  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 1512922 - 1512850
Alignment:
Q  113 tgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||||  ||||||||||| |||||| || ||||||||||| ||||| | |||| |||||| ||||||||||    
T  1512922 tgttcggagttcgaaccttagaccttacatatattatgcattgtccctactaactgagttaagctcacgagga 1512850  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 3156605 - 3156529
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||| ||||||||||||||  ||| |||| || | ||||||||||||| | |||||| |||||| ||||||||||    
T  3156605 gtggtggtcgggattcgaaccccaaatcttacatattttatgcattatccataccaactgagttaaactcacgagga 3156529  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 10199090 - 10199014
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||| ||||||||||||||  | ||||||||| ||||||||||| ||| | |||||| || ||| ||||||||||    
T  10199090 gtggtggtcgggattcgaaccccacaccttatatatattatgcattgtccataccaactgagctaagctcacgagga 10199014  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 11017245 - 11017170
Alignment:
Q  111 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 186  Q
    ||||| |||||||||||||| | |||||  || ||||||||||||||||| |||||| || ||| |||||| ||||    
T  11017245 ggtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactcacgcggat 11017170  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 2642788 - 2642825
Alignment:
Q  144 tattatgcattatccctgccaactaagttaatctcacg 181  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  2642788 tattatgcattatccctaccaactaagttaaactcacg 2642825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 20370143 - 20370196
Alignment:
Q  132 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    ||||||| ||| ||||||||||||||||| |||||| || ||| ||||||||||    
T  20370143 aaaccttgtatatattatgcattatccctaccaactgagctaagctcacgagga 20370196  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 7979746 - 7979789
Alignment:
Q  142 tttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  7979746 tttattatgcattatccctgccaactgagtcaaactcacgagga 7979789  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 16890449 - 16890514
Alignment:
Q  120 gattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||| |||||||| |||||| || | ||||||||| ||| | ||||||||||||| ||||||||||    
T  16890449 gatttgaaccttagaccttacatattttatgcattgtccataccaactaagttaagctcacgagga 16890514  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 35110125 - 35110077
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatc 157  Q
    |||||||| ||| ||||||||| |||||||| || ||||||||||||||    
T  35110125 gtggtgtttggggttcgaacctcaaaccttacatatattatgcattatc 35110077  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 41113245 - 41113187
Alignment:
Q  111 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaa 169  Q
    ||||||||| |||||||||  ||||||||||| ||||||| |||||| || ||||||||    
T  41113245 ggtgttcggtattcgaaccccaaaccttatatatattatgtattatctctaccaactaa 41113187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 48376898 - 48376830
Alignment:
Q  117 cgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    |||||||||||||  |||||||| || ||||||||||||||  | |||||| || ||| ||||||||||    
T  48376898 cgggattcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacgagga 48376830  T

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Target: scaffold0445 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 4541 - 4464
Alignment:
Q  109 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 186  Q
    ||||||| ||||||||||||  || |||||| || ||||||||||||| |||  ||||| |||||| |||||| ||||    
T  4541 gtggtgtccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctcacgtggat 4464  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 20096295 - 20096336
Alignment:
Q  144 tattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  20096295 tattatgcattatccctaccaactgagttaaactcacgagga 20096336  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 41897578 - 41897619
Alignment:
Q  144 tattatgcattatccctgccaactaagttaatctcacgagga 185  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  41897578 tattatgcaatatccctaccaactaagttaatctcacaagga 41897619  T

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