View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_319 (Length: 250)
Name: NF9288A_low_319
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_319 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 24546241 - 24546007
Alignment:
| Q |
1 |
ttttaccccttttactaattacattacaaaattaagctctctattatgatataaatggcatggccataattgcttctgttttcgttctttctacaaaccc |
100 |
Q |
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| T |
24546241 |
ttttaccccttttactaattatattacaaaattaagctctctattatgatataaatgacatggccatcattgcttcttttttcgttctttctacaaaccc |
24546142 |
T |
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| Q |
101 |
atgaatgcttcttttatttggaccggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaagattaggc |
200 |
Q |
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| T |
24546141 |
atgaatgcttctttt-tttggactggtaattccatagtgtttgcttcaatttagagtagactcaaattaacaaagattgacttcatctttaagattaggc |
24546043 |
T |
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| Q |
201 |
tgaagagcctcttattggttttacacttcaattata |
236 |
Q |
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| T |
24546042 |
tgaagagcctcttattggttttacacttcaattata |
24546007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 722 - 855
Alignment:
| Q |
95 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaag |
193 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |
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| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatt-----tagactcaaatt-agtaagattgacttcatctttaag |
815 |
T |
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| Q |
194 |
attaggctgaagagcctcttattggttttacacttcaatta |
234 |
Q |
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| T |
816 |
attggacttaa-agtctcttataggttttatgcttcaatta |
855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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