View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_33 (Length: 432)
Name: NF9288A_low_33
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_33 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0254 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 2162326 - 2162742
Alignment:
| Q |
7 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2162326 |
tgaagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcggtggaactacatatagaagaatggttgaaccactagct |
2162425 |
T |
|
| Q |
107 |
attgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttggaggaatggttggtagaagagtcatcaa |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| || ||| |
|
|
| T |
2162426 |
attgctcagtactatagagatggtggtaaagattatgtcaataaacatagatccaaacacttcaaaactttggaggaatggttagaggaagactcgacaa |
2162525 |
T |
|
| Q |
207 |
aagccgaaaatgaatcaaatagttcaagtaggaagaatgtggaagtggttttgactatagattcttgcttttgggcacatgttgaagaggctatacttgc |
306 |
Q |
| |
|
|| | ||||||||| ||| ||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2162526 |
aaactaaaaatgaattaaacagtacaagtaagaagaaagtggaagtgattttgactatagattcttgcttttgggcacatgttgaagaggctatacttgc |
2162625 |
T |
|
| Q |
307 |
atgcaaagagttgaacgaactgaaagacaaagaagaggtgatgaagaaattggttgaatttgaggactatgtttatggtttgcttaaggattatgctgtg |
406 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2162626 |
atgcaaagagttgaaagaagtgaaagacaaagaagaggtattgaacaaattggttgaatttgaagactatgtttatggtttgcttaaggattatgctgtg |
2162725 |
T |
|
| Q |
407 |
ccccctgagatattctt |
423 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2162726 |
tcccctgagattttctt |
2162742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 2168489 - 2168905
Alignment:
| Q |
7 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2168489 |
tgaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggatcttcggtggaactacatatagaagaatggttgaaccactagct |
2168588 |
T |
|
| Q |
107 |
attgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttggaggaatggttggtagaagagtca-tca |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| | |||| | || || |
|
|
| T |
2168589 |
attgctcaatactatagagacggtggtaaagattatatcaataaacaaagatccaaacacttcaaagctttggaggaatggttagaggaag-gccagaca |
2168687 |
T |
|
| Q |
206 |
aaagccgaaaatgaatcaaatagttcaagtaggaagaatgtggaagtggttttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
305 |
Q |
| |
|
||||| ||| |||||||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2168688 |
aaagctaaaattgaatcaaatcgtataaataggaagaatgtggaagtgattttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
2168787 |
T |
|
| Q |
306 |
catgcaaagagttgaacgaactgaaagacaaagaagaggtgatgaagaaattggttgaatttgaggactatgtttatggtttgcttaaggattatgctgt |
405 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
2168788 |
catgcaaagagttgaaggttgtgaaatacaaagaagaggtattgaataaattggttgaatttgaaaactatgtttatggtttgcttaaggattatgttgt |
2168887 |
T |
|
| Q |
406 |
gccccctgagatattctt |
423 |
Q |
| |
|
| | |||||||| ||||| |
|
|
| T |
2168888 |
gtctcctgagattttctt |
2168905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 2180122 - 2180538
Alignment:
| Q |
7 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2180122 |
tgaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggatcttcggtggaactacatatagaagaatggttgaaccactagct |
2180221 |
T |
|
| Q |
107 |
attgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttggaggaatggttggtagaagagtca-tca |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| | |||| | || || |
|
|
| T |
2180222 |
attgctcaatactatagagacggtggtaaagattatatcaataaacaaagatccaaacacttcaaagctttggaggaatggttagaggaag-gccagaca |
2180320 |
T |
|
| Q |
206 |
aaagccgaaaatgaatcaaatagttcaagtaggaagaatgtggaagtggttttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
305 |
Q |
| |
|
||||| ||| |||||||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2180321 |
aaagctaaaattgaatcaaatcgtataaataggaagaatgtggaagtgattttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
2180420 |
T |
|
| Q |
306 |
catgcaaagagttgaacgaactgaaagacaaagaagaggtgatgaagaaattggttgaatttgaggactatgtttatggtttgcttaaggattatgctgt |
405 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
2180421 |
catgcaaagagttgaaggttgtgaaatacaaagaagaggtattgaataaattggttgaatttgaaaactatgtttatggtttgcttaaggattatgttgt |
2180520 |
T |
|
| Q |
406 |
gccccctgagatattctt |
423 |
Q |
| |
|
| | |||||||| ||||| |
|
|
| T |
2180521 |
gtctcctgagattttctt |
2180538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 80 - 400
Target Start/End: Original strand, 2207431 - 2207739
Alignment:
| Q |
80 |
tatagaagaatggttgaaccactagttattgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttgg |
179 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||||||||||| |||||| |||| |||||||||||||||| |||| |
|
|
| T |
2207431 |
tatagaagaatggttgaaccattagctattgctcaatactacaaagaaggtggtaaagattatgtgaataaaaaaaggtccaaacacttcaaaaaattgg |
2207530 |
T |
|
| Q |
180 |
aggaatggttggtagaagagtcatcaaaagccgaaaatgaatcaaatagttcaagtaggaagaatgtggaagtggttttgactatagattcttgcttttg |
279 |
Q |
| |
|
||||| ||||| ||| ||| |||||||| ||||| | |||| | || |||| || || || ||||||||| ||||||||||||||| |
|
|
| T |
2207531 |
aggaac------------agtcaagaaatgccataaatgaattaaatattacaaggaagacgaatatgaaaatgattttgactagagattcttgcttttg |
2207618 |
T |
|
| Q |
280 |
ggcacatgttgaagaggctatacttgcatgcaaagagttgaacgaactgaaagacaaagaagaggtgatgaagaaattggttgaatttgaggactatgtt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2207619 |
ggcacatgttgaagaggctatacttgcatgcaacgagttgaaggttgtgaaagacaaagaagaggtattgaagaaattggttgaatttgaggactatgtt |
2207718 |
T |
|
| Q |
380 |
tatggtttgcttaaggattat |
400 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2207719 |
tattgtttgcttaaggattat |
2207739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 2153494 - 2153537
Alignment:
| Q |
255 |
ttttgactatagattcttgcttttgggcacatgttgaagaggct |
298 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
2153494 |
ttttaactctagattcttgcttttgggcatatgttgaagaggct |
2153537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 14779 - 14362
Alignment:
| Q |
7 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14779 |
tgaagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcggtggaactacatatagaagaatggttgaaccactagct |
14680 |
T |
|
| Q |
107 |
attgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttgg-aggaatggttggtagaagagtcatca |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| | ||||| || || |
|
|
| T |
14679 |
attgctcagtactatagagatggtggtaaagattatgtcaataaacatagatccaaacacttcaaaactttgggaggaatggttagaggaagactcgaca |
14580 |
T |
|
| Q |
206 |
aaagccgaaaatgaatcaaatagttcaagtaggaagaatgtggaagtggttttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
305 |
Q |
| |
|
||| | ||||||||| ||| ||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14579 |
aaaactaaaaatgaattaaacagtacaagtaagaagaaagtggaagtgattttgactatagattcttgcttttgggcacatgttgaagaggctatacttg |
14480 |
T |
|
| Q |
306 |
catgcaaagagttgaacgaactgaaagacaaagaagaggtgatgaagaaattggttgaatttgaggactatgtttatggtttgcttaaggattatgctgt |
405 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14479 |
catgcaaagagttgaaagaagtgaaagacaaagaagaggtattgaacaaattggttgaatttgaagactatgtttatggtttgcttaaggattatgctgt |
14380 |
T |
|
| Q |
406 |
gccccctgagatattctt |
423 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
14379 |
gtcccctgagattttctt |
14362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 2208 - 2026
Alignment:
| Q |
7 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2208 |
tgaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggctcttcggtggaactacatatagaagaatggttgaaccactagct |
2109 |
T |
|
| Q |
107 |
attgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttggaggaatggtt |
189 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
2108 |
attgctcaatactatagagacggtggtaaagattatatcaataaacaaagatccaaacacttcaaagctttggaggaatggtt |
2026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 420
Target Start/End: Complemental strand, 27784965 - 27784784
Alignment:
| Q |
239 |
aagaatgtggaagtggttttgactatagattcttgcttttgggcacatgttgaagaggctatacttgcatgcaaagagttgaacgaactgaaagacaaag |
338 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||||| | | ||||| |||| |
|
|
| T |
27784965 |
aagaatgtggaagctattttgactatagattcttgcttttgggcgcatgttgaagaggctcttcttttatgcggagagttgaagggtgtcaaagagaaag |
27784866 |
T |
|
| Q |
339 |
aagaggtgatgaagaaattggttgaatttgaggactatgtttatggtttgcttaaggattatgctgtgccccctgagatatt |
420 |
Q |
| |
|
| || || | ||||||||| || || |||||| ||||||||||| ||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
27784865 |
acgatgtactaaagaaattgtttaaaattgaggtgtatgtttatggattgctcaaggattatgcagtgtctcctgagatatt |
27784784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 27781219 - 27781116
Alignment:
| Q |
86 |
agaatggttgaaccactagttattgctcaatactatagagatggtggtaaagattatgtcaataaacaaagatccaaacacttcaaaaccttggaggaat |
185 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| | || |||| ||| |||||| |||| |||| || |||||||||||| |||||||||| |
|
|
| T |
27781219 |
agaatggttgaacctctagctattgctgaatactatagaaaaggcggtatagactatgtc-ataacaaaaggtctaaacacttcaaacagttggaggaat |
27781121 |
T |
|
| Q |
186 |
ggttg |
190 |
Q |
| |
|
||||| |
|
|
| T |
27781120 |
ggttg |
27781116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 27781049 - 27780993
Alignment:
| Q |
265 |
agattcttgcttttgggcacatgttgaagaggctatacttgcatgcaaagagttgaa |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
27781049 |
agattcgtgcttttgggcacatgttgaagaggctctccttttatgcagagagttgaa |
27780993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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