View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_334 (Length: 249)
Name: NF9288A_low_334
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_334 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 30851428 - 30851360
Alignment:
| Q |
36 |
atggacatcaattttctatcagttgggttaatcaatcaatattaaaatacaatgattcacatttaaatc |
104 |
Q |
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| T |
30851428 |
atggatatcaattttctatcagttgggttaatcaatcaatattaaaatacaatgattcacatttaaatc |
30851360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 30851164 - 30851119
Alignment:
| Q |
204 |
tgctttgaattataaatacaaatttttgcacaaactaatgtaagat |
249 |
Q |
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| T |
30851164 |
tgctttgaattataaatacaaatttttgcacaaactaatgtaagat |
30851119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 30851296 - 30851262
Alignment:
| Q |
168 |
caaatgcttttctcataagtgaatttcacaaacaa |
202 |
Q |
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| T |
30851296 |
caaatgcttttctcataagtgaatttcacaaacaa |
30851262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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