View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_335 (Length: 249)
Name: NF9288A_low_335
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_335 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3272173 - 3272419
Alignment:
| Q |
1 |
aaaaactaagttcgatttctagtaaaaataattattggtcagactttatttaccttctaaccgaaccggattgctagggcctctttccctaaaaaccgga |
100 |
Q |
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| T |
3272173 |
aaaaactaagttcgattcctagtagaaataattattggtcagactttatttaccttctaaccgaaccggattgctagggcctcttcccctaaaaaccgga |
3272272 |
T |
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| Q |
101 |
gggttaacacaaannnnnnnnnnn----gacaaacagtgtggtttcatgttttttacatcatataacagcaatttcacaagcaatgtggttagatagatt |
196 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3272273 |
gggttaacacaattttttttttttttttgacaaacagtgtggtttcatgttttttacatcatataacagcaatttcacaagcaatgtggttagatagatt |
3272372 |
T |
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| Q |
197 |
gttcaaaagaaagcattttctttgaagggagttttacattctgtttt |
243 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3272373 |
gttcaaaagaaaccattttctttgaagggagttttacattctgtttt |
3272419 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 577417 - 577465
Alignment:
| Q |
9 |
agttcgatttctagtaaaaataattattggtcagactttatttaccttc |
57 |
Q |
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||||||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
577417 |
agttcgattcgtagtgaaaataattattggtcagattttacttaccttc |
577465 |
T |
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