View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_338 (Length: 249)
Name: NF9288A_low_338
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_338 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17701163 - 17701395
Alignment:
| Q |
1 |
tttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacagaactca |
100 |
Q |
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| T |
17701163 |
tttgtttgtttcaggttgaacaagaatcttcgaggagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacaaaactca |
17701262 |
T |
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| Q |
101 |
caactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttatcaaaggaatggtgag |
200 |
Q |
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| T |
17701263 |
caactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcatgatcatggctgtttttgggtttatcaaacgaatggtgag |
17701362 |
T |
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| Q |
201 |
aagaaggtgaagaatagtgtttgttcatgatgt |
233 |
Q |
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| T |
17701363 |
aagaaggtgaagaatagtgtttgttcatgatgt |
17701395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17662916 - 17662684
Alignment:
| Q |
1 |
tttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacagaactca |
100 |
Q |
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| T |
17662916 |
tttgtttgtttcaggttgaacaagaatcttagaggagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacaaaactca |
17662817 |
T |
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| Q |
101 |
caactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttatcaaaggaatggtgag |
200 |
Q |
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| T |
17662816 |
caattgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcatgatcatggctgtttttgggtttatgaaacgaatggtgag |
17662717 |
T |
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| Q |
201 |
aagaaggtgaagaatagtgtttgttcatgatgt |
233 |
Q |
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| T |
17662716 |
aagaaggtgaagaatagggtttgttcatgatgt |
17662684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 22667771 - 22667820
Alignment:
| Q |
177 |
tgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttc |
226 |
Q |
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| T |
22667771 |
tgggtttatcaaacgaataatgagaagaaggtgaagaatagtgtttgttc |
22667820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 22667050 - 22667110
Alignment:
| Q |
125 |
tttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttat |
185 |
Q |
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| T |
22667050 |
tttttcatatcagtttcaagagtctcttggtgatcttgatcatggctgttgttgggtttat |
22667110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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