View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_340 (Length: 249)
Name: NF9288A_low_340
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_340 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 17944103 - 17944185
Alignment:
| Q |
162 |
atatgataacaaatgcttaaagttaacaagttctaataatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
244 |
Q |
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| T |
17944103 |
atatgataacaaatgcttaaagttaacaaattctaacaatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
17944185 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 17943922 - 17943980
Alignment:
| Q |
7 |
tttggtgttttcaattttacattatagctagatgccatattatatttgatttgcattac |
65 |
Q |
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| T |
17943922 |
tttggtgctttcaattttacattatagctagatgccatattatatttgatttgcattac |
17943980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 13664124 - 13664090
Alignment:
| Q |
204 |
acatatttgtaaagaaaatactgaagtcttccctg |
238 |
Q |
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| T |
13664124 |
acatatttgtaaagaaaatactgaagtcttccctg |
13664090 |
T |
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