View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_343 (Length: 249)
Name: NF9288A_low_343
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_343 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 37766010 - 37766244
Alignment:
| Q |
9 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
108 |
Q |
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| T |
37766010 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
37766109 |
T |
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| Q |
109 |
gccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtaaagttactttctttcctacct |
208 |
Q |
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| T |
37766110 |
gctgatgtttatagctacggaatgatgcttttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctacct |
37766209 |
T |
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| Q |
209 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
243 |
Q |
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| T |
37766210 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
37766244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 37799729 - 37799519
Alignment:
| Q |
16 |
ggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatg |
115 |
Q |
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| T |
37799729 |
ggacgagatttcagaagaatccttacaaacatggaaggatcaagaggctatctttccccagagtggatatctagggctgctatcacagccaaatctgatg |
37799630 |
T |
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| Q |
116 |
cttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtaaagttactttctttcctaccttagctgc |
215 |
Q |
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| T |
37799629 |
tttacagttatggaatgatgctttttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaatactttctttccaaccttggctgc |
37799530 |
T |
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| Q |
216 |
aaaagtagtta |
226 |
Q |
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| T |
37799529 |
tacagtagtta |
37799519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 16214 - 16407
Alignment:
| Q |
25 |
ttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagct |
124 |
Q |
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| T |
16214 |
ttcagccgggtcctcactaccatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagct |
16313 |
T |
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| Q |
125 |
acggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtaaagttactttctttcctaccttagctgcaaa |
218 |
Q |
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| T |
16314 |
acggaatgatgcttttcgagctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa |
16407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 38388077 - 38388212
Alignment:
| Q |
44 |
ccatgagaggaacaagaggctaccttgctccgga---gtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctttt |
140 |
Q |
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| T |
38388077 |
ccatgagaggaacaagaggctatctagctccagatgagtggatttcgggagtttctataaccgctaaagccgatgtttacaactacagaatgatgctttt |
38388176 |
T |
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| Q |
141 |
cgaggttgtatcaggtaggaggaactccgatccttc |
176 |
Q |
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| T |
38388177 |
cgagctcgtgtcaggaagaagaaactctgatccttc |
38388212 |
T |
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