View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_350 (Length: 248)

Name: NF9288A_low_350
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_350
NF9288A_low_350
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-242)||(58137-58369)
[»] chr1 (13 HSPs)
chr1 (162-232)||(49557087-49557157)
chr1 (162-233)||(49517016-49517087)
chr1 (164-225)||(15360842-15360903)
chr1 (172-233)||(30371104-30371165)
chr1 (173-236)||(34179922-34179985)
chr1 (162-200)||(14737791-14737829)
chr1 (162-200)||(36641821-36641859)
chr1 (162-236)||(38578473-38578547)
chr1 (162-219)||(4200175-4200232)
chr1 (176-233)||(27738233-27738290)
chr1 (173-233)||(25479538-25479598)
chr1 (173-233)||(28467360-28467420)
chr1 (163-199)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-236)||(27522-27596)
[»] chr7 (5 HSPs)
chr7 (167-233)||(1417215-1417281)
chr7 (162-220)||(28165037-28165095)
chr7 (162-200)||(39591553-39591591)
chr7 (162-199)||(5276170-5276207)
chr7 (167-236)||(30456500-30456569)
[»] chr4 (9 HSPs)
chr4 (162-236)||(49219085-49219159)
chr4 (167-226)||(4071833-4071892)
chr4 (167-238)||(24929444-24929515)
chr4 (162-220)||(30024646-30024704)
chr4 (164-233)||(8130122-8130191)
chr4 (167-200)||(41701527-41701560)
chr4 (174-226)||(18630638-18630690)
chr4 (159-199)||(23815313-23815353)
chr4 (181-233)||(32920453-32920505)
[»] chr6 (8 HSPs)
chr6 (162-233)||(4006660-4006731)
chr6 (162-201)||(28531626-28531665)
chr6 (159-199)||(5328917-5328957)
chr6 (159-233)||(2027459-2027533)
chr6 (162-236)||(9668035-9668109)
chr6 (162-200)||(24836285-24836323)
chr6 (167-200)||(5551413-5551446)
chr6 (173-233)||(2727909-2727969)
[»] chr3 (11 HSPs)
chr3 (162-233)||(24235736-24235807)
chr3 (162-231)||(48364934-48365003)
chr3 (162-231)||(48397592-48397661)
chr3 (162-226)||(20192666-20192730)
chr3 (159-199)||(54775071-54775111)
chr3 (162-233)||(10101529-10101600)
chr3 (162-233)||(10212454-10212525)
chr3 (166-232)||(22214735-22214801)
chr3 (175-223)||(26599137-26599185)
chr3 (162-210)||(39971265-39971313)
chr3 (162-234)||(48323767-48323839)
[»] chr8 (7 HSPs)
chr8 (162-236)||(38561672-38561746)
chr8 (162-199)||(26820145-26820182)
chr8 (169-226)||(34551073-34551130)
chr8 (162-199)||(40728505-40728542)
chr8 (181-233)||(6509356-6509408)
chr8 (163-199)||(29699201-29699237)
chr8 (177-233)||(34770853-34770909)
[»] chr5 (6 HSPs)
chr5 (125-200)||(21782655-21782727)
chr5 (163-234)||(37690689-37690760)
chr5 (167-226)||(42181152-42181211)
chr5 (163-233)||(37526252-37526322)
chr5 (163-233)||(37588413-37588483)
chr5 (166-199)||(39823208-39823241)
[»] chr2 (5 HSPs)
chr2 (176-233)||(11513858-11513915)
chr2 (159-199)||(43199186-43199226)
chr2 (162-233)||(10143118-10143189)
chr2 (162-236)||(43199360-43199434)
chr2 (162-199)||(3458603-3458640)


Alignment Details
Target: scaffold0049 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 58369 - 58137
Alignment:
Q  1 atcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58369 atcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagc 58270  T
Q  101 atttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  58269 atttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtg---------tttaagttatttatataacaaaagataacataaagtcaaat 58179  T
Q  201 agtattaatatacgctataagttgttctcataaactctctcg 242  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  58178 agtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcata 232  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || ||||||||||||| |||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||| ||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  164 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 225  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  172 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||| ||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  173 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    ||||||||||||||| |||||||||||| || ||||| || |||||||  |||| |||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaat 200  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaat 200  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| |||||||||||||  ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 4200175 - 4200232
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctata 219  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctata 4200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 27738290 - 27738233
Alignment:
Q  176 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||||| |||||||||||| || || ||||| ||||||| ||||| ||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 25479538 - 25479598
Alignment:
Q  173 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||| |||||||| |||| ||||||| || || ||||| ||||||||||||| ||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  173 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||||||||||| ||||||||||||  | || ||||| |||| |||||||| ||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  163 aagttatttatataacaaaagataacataaagtcaaa 199  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  |||||||||||| |||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||| ||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 220  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaat 200  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaa 199  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 30456569 - 30456500
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    ||||| || |||||||||||| |||||||||||| || || ||||| | ||||||| ||| |||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| ||||||||||||| |||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 226  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaactct 238  Q
    ||||| ||||||||||||||| |||||||| ||  || || ||| | ||||||||||||| |||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 220  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  164 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||| ||| ||||||||||||||||||||||||||||  | || ||||| |||||||  |||| ||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaat 200  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 18630638 - 18630690
Alignment:
Q  174 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 226  Q
    |||||||||||||| |||||||||| | || || ||||| |||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgtt 18630690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  159 gtttaagttatttatataacaaaagataacataaagtcaaa 199  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  181 aagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||| ||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||| ||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaata 201  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  159 gtttaagttatttatataacaaaagataacataaagtcaaa 199  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 2027533 - 2027459
Alignment:
Q  159 gtttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||| ||||| ||||||||||||||| |||||||||||   | || |||||  ||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaactattttcatataacctataagctgttctcataa 2027459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || || ||||| |||| || ||||| |||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaat 200  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaat 200  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  173 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||||||||   ||| |||||| ||||| ||||| ||||||||||||| ||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||| ||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcat 231  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||| ||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcat 231  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||| ||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 20192730 - 20192666
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 226  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| ||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtt 20192666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  159 gtttaagttatttatataacaaaagataacataaagtcaaa 199  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||| ||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||| ||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  166 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcata 232  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  |||||||||||| |||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  175 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 223  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaata 210  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaa 234  Q
    |||||||||| ||||| ||||||||| |||||||||||| || ||  | || ||||||| ||||| |||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||||||||||||||||||||||||| |||||||||||   | || || ||  |||||||||||| |||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaa 199  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 34551073 - 34551130
Alignment:
Q  169 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 226  Q
    |||||||||||||||||||||| ||||||||| || || || || | |||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgtt 34551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaa 199  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  181 aagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||| ||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  163 aagttatttatataacaaaagataacataaagtcaaa 199  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 34770853 - 34770909
Alignment:
Q  177 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||||||| |||||||||||| || || || || ||||||||||||| ||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  125 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 200  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  163 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaa 234  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||| |||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 42181211 - 42181152
Alignment:
Q  167 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 226  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| |||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgtt 42181152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  163 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||| ||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  163 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||| ||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 39823241 - 39823208
Alignment:
Q  166 ttatttatataacaaaagataacataaagtcaaa 199  Q
    |||||||||||||||||||||| |||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaa 39823208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 11513858 - 11513915
Alignment:
Q  176 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||| ||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  159 gtttaagttatttatataacaaaagataacataaagtcaaa 199  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 10143118 - 10143189
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataa 233  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| |||||||||| || ||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataa 10143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttctcataaact 236  Q
    |||||||||| || |||||||||||| ||||||| ||||  | ||  |||| ||||||||||||| |||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  162 taagttatttatataacaaaagataacataaagtcaaa 199  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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