View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_351 (Length: 248)
Name: NF9288A_low_351
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_351 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 46240125 - 46239893
Alignment:
| Q |
1 |
aaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
46240125 |
aaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagc |
46240026 |
T |
|
| Q |
101 |
atatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46240025 |
atatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccact |
46239926 |
T |
|
| Q |
201 |
gcatgattcgtcctcatgtcatccatgatgtcc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
46239925 |
gcatgattcgtcctcatgtcatccatgatgtcc |
46239893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 23541436 - 23541295
Alignment:
| Q |
84 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
183 |
Q |
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|
||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
|
| Q |
184 |
ctttggtgatacccactgcatgattcgtcctcatgtcatcca |
225 |
Q |
| |
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| | || |||||||||||||| || |||||||||||||||| |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3437354 - 3437574
Alignment:
| Q |
1 |
aaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3437354 |
aaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagc |
3437453 |
T |
|
| Q |
101 |
atatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3437454 |
atatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc------------tacccact |
3437541 |
T |
|
| Q |
201 |
gcatgattcgtcctcatgtcatccatgatgtcc |
233 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
3437542 |
gcatgattcgtcctcatgtcatcgatgatgtcc |
3437574 |
T |
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