View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_354 (Length: 248)
Name: NF9288A_low_354
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_354 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 31867828 - 31867595
Alignment:
| Q |
3 |
atgtcgaagaatattgaaaactcgggaaaaa--cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaacc |
100 |
Q |
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| T |
31867828 |
atgtcgatgaaaattgaaaactcgggaaaaaaacttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaacc |
31867729 |
T |
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| Q |
101 |
aaatctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaccaaaatactaatgct |
200 |
Q |
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| T |
31867728 |
aaatctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaacaaaatactaatgct |
31867629 |
T |
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| Q |
201 |
tgaacatttggcacgataacatgataccaattaa |
234 |
Q |
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| T |
31867628 |
tgtacatttggctcgataacatgatacccattaa |
31867595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 31858982 - 31858758
Alignment:
| Q |
6 |
tcgaagaatattgaaaactcgggaaaaa-cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaaccaaat |
104 |
Q |
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| T |
31858982 |
tcgatgaaaattggaaactcgggaaaaaacttcccaagccttgaatgctatcatgaggaaactccactaagttcaattgtacttacaac-aaaagcaaat |
31858884 |
T |
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| Q |
105 |
ctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatat---aaataaaaatatcaatcatcaaccaaaatactaatgctt |
201 |
Q |
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| T |
31858883 |
ctatcatatggattctgaaaa-tttatgatatgcagtcatttaatgtttaacgaatataaaaaataaaaataccaatcatcaaataaaatactaatgctt |
31858785 |
T |
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| Q |
202 |
gaacatttggcacgataacatgatacc |
228 |
Q |
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| T |
31858784 |
gcacattgggcttgataacatgatacc |
31858758 |
T |
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