View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_355 (Length: 248)

Name: NF9288A_low_355
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_355
NF9288A_low_355
[»] chr4 (17 HSPs)
chr4 (103-235)||(40390972-40391104)
chr4 (101-222)||(38377891-38378011)
chr4 (7-106)||(40391556-40391655)
chr4 (122-229)||(784061-784168)
chr4 (103-238)||(15025858-15025991)
chr4 (7-106)||(40380215-40380314)
chr4 (130-238)||(11672485-11672592)
chr4 (103-227)||(48282800-48282920)
chr4 (124-193)||(15882103-15882172)
chr4 (124-188)||(10574064-10574128)
chr4 (103-236)||(6449624-6449756)
chr4 (103-194)||(23410332-23410424)
chr4 (103-236)||(33610026-33610159)
chr4 (124-193)||(52123652-52123721)
chr4 (135-236)||(31049959-31050061)
chr4 (149-236)||(20403240-20403328)
chr4 (103-179)||(35414570-35414646)
[»] chr8 (17 HSPs)
chr8 (105-238)||(12596934-12597067)
chr8 (103-236)||(10467436-10467570)
chr8 (121-234)||(32797017-32797130)
chr8 (120-236)||(39344665-39344781)
chr8 (103-226)||(26938819-26938941)
chr8 (124-236)||(33038297-33038408)
chr8 (120-237)||(17219673-17219791)
chr8 (124-190)||(17153669-17153735)
chr8 (103-230)||(8026105-8026231)
chr8 (121-238)||(42023957-42024073)
chr8 (121-225)||(33695214-33695318)
chr8 (123-210)||(16483876-16483963)
chr8 (124-190)||(17156948-17157014)
chr8 (142-231)||(24916031-24916119)
chr8 (103-177)||(35054983-35055057)
chr8 (124-161)||(17143142-17143179)
chr8 (134-227)||(24292165-24292257)
[»] chr5 (19 HSPs)
chr5 (103-239)||(16089764-16089900)
chr5 (103-238)||(15069998-15070134)
chr5 (103-239)||(19343631-19343767)
chr5 (103-236)||(36235836-36235969)
chr5 (103-236)||(5459091-5459223)
chr5 (101-196)||(1298817-1298911)
chr5 (103-233)||(26724196-26724327)
chr5 (122-209)||(38948632-38948719)
chr5 (140-202)||(6502283-6502345)
chr5 (184-232)||(35270758-35270806)
chr5 (121-236)||(38607378-38607494)
chr5 (122-229)||(30403539-30403647)
chr5 (149-236)||(14820414-14820501)
chr5 (204-235)||(26188812-26188843)
chr5 (140-195)||(34005654-34005709)
chr5 (141-236)||(34784027-34784121)
chr5 (171-233)||(39058478-39058540)
chr5 (142-239)||(5159469-5159566)
chr5 (111-168)||(39057143-39057200)
[»] chr3 (15 HSPs)
chr3 (103-239)||(44446805-44446941)
chr3 (103-236)||(28769459-28769592)
chr3 (101-238)||(50334584-50334723)
chr3 (103-238)||(34359411-34359546)
chr3 (103-236)||(20314970-20315101)
chr3 (121-236)||(38673254-38673370)
chr3 (122-236)||(44648123-44648235)
chr3 (122-238)||(39340851-39340965)
chr3 (103-210)||(52423102-52423210)
chr3 (130-234)||(17268915-17269020)
chr3 (119-190)||(41544534-41544605)
chr3 (157-231)||(45743817-45743891)
chr3 (173-218)||(2382870-2382915)
chr3 (103-168)||(20336927-20336992)
chr3 (184-236)||(16876466-16876518)
[»] chr6 (14 HSPs)
chr6 (102-239)||(17957109-17957246)
chr6 (103-226)||(17157991-17158114)
chr6 (103-230)||(6197898-6198025)
chr6 (121-239)||(4254508-4254626)
chr6 (130-230)||(10313395-10313495)
chr6 (103-236)||(24672352-24672483)
chr6 (103-223)||(4408948-4409058)
chr6 (156-236)||(34187125-34187205)
chr6 (120-236)||(30465127-30465243)
chr6 (116-207)||(12611904-12611994)
chr6 (164-236)||(10516584-10516655)
chr6 (103-210)||(5644646-5644753)
chr6 (178-236)||(2538638-2538695)
chr6 (103-161)||(12338950-12339008)
[»] chr7 (14 HSPs)
chr7 (102-239)||(20132133-20132270)
chr7 (122-230)||(28098618-28098727)
chr7 (103-236)||(13009317-13009451)
chr7 (126-238)||(11297838-11297951)
chr7 (123-196)||(34471348-34471421)
chr7 (103-236)||(27567617-27567752)
chr7 (124-210)||(48696447-48696532)
chr7 (103-236)||(30851589-30851722)
chr7 (115-234)||(33991899-33992019)
chr7 (148-196)||(39596738-39596786)
chr7 (103-161)||(22485125-22485182)
chr7 (142-236)||(25067734-25067828)
chr7 (123-238)||(25411518-25411633)
chr7 (142-218)||(12925313-12925389)
[»] chr1 (9 HSPs)
chr1 (107-238)||(20986008-20986141)
chr1 (103-236)||(33752913-33753046)
chr1 (103-190)||(29307555-29307642)
chr1 (124-238)||(13392890-13393006)
chr1 (103-238)||(16545363-16545497)
chr1 (147-227)||(37470903-37470983)
chr1 (103-190)||(29102970-29103057)
chr1 (103-161)||(23230836-23230894)
chr1 (104-169)||(35218150-35218215)
[»] chr2 (13 HSPs)
chr2 (103-236)||(35954306-35954440)
chr2 (131-236)||(34904093-34904198)
chr2 (121-236)||(8794655-8794770)
chr2 (116-236)||(10077686-10077808)
chr2 (103-238)||(39293064-39293198)
chr2 (121-237)||(30640995-30641112)
chr2 (122-236)||(6191172-6191285)
chr2 (122-236)||(24490520-24490638)
chr2 (111-236)||(31994684-31994809)
chr2 (136-235)||(855648-855752)
chr2 (103-235)||(29242513-29242646)
chr2 (111-210)||(27694475-27694574)
chr2 (141-237)||(434511-434607)
[»] scaffold0233 (1 HSPs)
scaffold0233 (121-226)||(16894-16999)
[»] scaffold0020 (1 HSPs)
scaffold0020 (121-236)||(152141-152256)
[»] scaffold0005 (1 HSPs)
scaffold0005 (101-238)||(253697-253833)
[»] scaffold0478 (1 HSPs)
scaffold0478 (124-190)||(3352-3418)
[»] scaffold0036 (1 HSPs)
scaffold0036 (122-233)||(48396-48509)
[»] scaffold1911 (1 HSPs)
scaffold1911 (124-190)||(113-179)
[»] scaffold0720 (2 HSPs)
scaffold0720 (121-238)||(5440-5553)
scaffold0720 (115-152)||(7458-7495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-218)||(363064-363140)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 40391104 - 40390972
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40391104 tttagtccctacaaattttttattcacttttagtccctatttgcattttatagggactattttggagaactaaaagtattcattttttgtaaaatgtttt 40391005  T
Q  203 aaaaatagagattattcttacaaactacaatat 235  Q
    ||||||||||| |||||||||||||||||||||    
T  40391004 aaaaatagagactattcttacaaactacaatat 40390972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 38378011 - 38377891
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 200  Q
    |||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||| |||    
T  38378011 aatttagtcctta-aaattttttattcacttttattccctatttgcattttatagggactattttggaggactaaaagtgttcattttttataaaaagtt 38377913  T
Q  201 ttaaaaatagagattattctta 222  Q
    || ||||||| || ||||||||    
T  38377912 tttaaaatagggactattctta 38377891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40391655 - 40391556
Alignment:
Q  7 tgagcattgtaagaggatttggtagtcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 106  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||  || |||||||||||||||||||||    
T  40391655 tgagcgttgtaagaggatttggtaatcagtaaaatgaggagtaaaaaaattgagataataatgtgataattcaatagatagatgtatataattcaattta 40391556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 784061 - 784168
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    |||||||||||||||  |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||||||||||| ||||| ||||||| ||||||| ||    
T  784061 ttattcacttttagtttctattttcattttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattattttt 784160  T
Q  222 acaaacta 229  Q
    | ||||||    
T  784161 agaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 15025991 - 15025858
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||| |||||||||||||||  |||||||| |||||| ||||||| ||| ||||||| || ||||||||||| |||||    
T  15025991 tttagtccctacaaaaattttattcatttttagtccctatttatattttataaggactattttggaggact-aaagtataca-tttttgtaaaaagtttt 15025894  T
Q  203 aaaaatagagattattcttacaaactacaatatttt 238  Q
     ||||||| || |||| | |||||||| ||||||||    
T  15025893 caaaatagggactattatcacaaactataatatttt 15025858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40380314 - 40380215
Alignment:
Q  7 tgagcattgtaagaggatttggtagtcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 106  Q
    ||||| |||||||||||||||||| ||| |||| ||| |||||||||| ||||||| ||| |||||||||||||   ||||||| |||| ||||||||||    
T  40380314 tgagcgttgtaagaggatttggtaatcagtaaagtgaagagtaaaaaaagtgagattatattgtgataattcaataaagagatgaatatgattcaattta 40380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 11672485 - 11672592
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 229  Q
    ||||||||  |||||  ||||||||||||||| |||| || ||||||||||| ||||||| ||||  | |||| |||||||||| |||||||||||||||    
T  11672485 ttttagtctttatttatattttatagggactattttgcaggactaaaagtatacattttt-gtaatttttttttaaaatagagactattcttacaaacta 11672583  T
Q  230 caatatttt 238  Q
    ||| |||||    
T  11672584 caaaatttt 11672592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 48282920 - 48282800
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||  |||||||||||||||||||    || |||||||||| ||||| ||| ||| ||||||| |||  ||||||||||||| |||||    
T  48282920 tttagtccctacaaaaaatttattcacttttagtcc---attacattttatagagactattttagaggactaaaaatatctattttttgtaaaa-gtttt 48282825  T
Q  203 aaaaatagagattattcttacaaac 227  Q
      ||||| ||| |||||||||||||    
T  48282824 ttaaataaagactattcttacaaac 48282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 15882103 - 15882172
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 193  Q
    |||||||||||||||||||||| |||||| ||||||||  |||||| ||||||| ||| |||||||||||    
T  15882103 attcacttttagtccctatttgtattttagagggactatcttggaggactaaaactatccattttttgta 15882172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 10574128 - 10574064
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttt 188  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||    
T  10574128 attcacctttagtccctatttgcattttacagggactattttggaggactaaaaatatccatttt 10574064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 6449624 - 6449756
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||| ||||||  ||||||||||||||||||  |||||| |||| |||  ||||| |||| |  ||||||||| | ||| ||||| |||| |||||    
T  6449624 tttagtccttacaaaaaatttattcacttttagtcgatatttgtattt-ataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttt 6449722  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||| || |||| |||||||||||| ||||    
T  6449723 taaaatagggactatttttacaaactacattatt 6449756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 23410332 - 23410424
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattt-tatagggactagtttggagaactaaaagtattcattttttgtaa 194  Q
    |||||||||||||||  || |||||||||||| ||  ||||||||||| |||| | |||| ||||||| |||||||||||  |||||||||||    
T  23410332 tttagtccctacaaaaaatatattcacttttattctttatttgcatttatatatgaactattttggaggactaaaagtatatattttttgtaa 23410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 33610159 - 33610026
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||| ||||| ||| | ||||| |||||||||| | |||||| || ||||  |||||| ||  ||| |||||| |||  ||||||||| |||| |||||    
T  33610159 tttagaccctataaaatttttatccacttttagttcttatttggatattatttggactatttcagaggactaaacgtagacattttttgcaaaaagtttt 33610060  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||  || |||||||| |||||||||||||    
T  33610059 caaaataaggactattcttataaactacaatatt 33610026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 52123652 - 52123721
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 193  Q
    ||||||||||| |  ||||||| ||||||||| ||||| ||||||| ||||||||||| ||| |||||||    
T  52123652 attcacttttaatatctatttgtattttatagagactattttggaggactaaaagtatccatattttgta 52123721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 31049959 - 31050061
Alignment:
Q  135 gtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 233  Q
    |||| ||||| ||||| |||| ||||| ||||||||||||||| | | || |||||||||||| ||||| ||||||  || |||  |||||| |||||||    
T  31049959 gtccatatttacatttcatagagactattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaat 31050058  T
Q  234 att 236  Q
    |||    
T  31050059 att 31050061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 20403328 - 20403240
Alignment:
Q  149 tttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    ||||||||||||| | ||||| | ||||| ||| |||||||| |||||| ||||| | | ||| || ||||||||||||||| ||||||    
T  20403328 tttatagggactattgtggaggaataaaaatatccatttttttgtaaaaagtttttagattagggactattcttacaaactataatatt 20403240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 35414646 - 35414570
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagt 179  Q
    |||||||| || ||||| || ||||| ||||||||  ||||| ||||||||||||||||  ||| || |||||||||    
T  35414646 tttagtccatataaatttttgattcatttttagtctatatttacattttatagggactatgttgaaggactaaaagt 35414570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 12597067 - 12596934
Alignment:
Q  105 tagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaa 204  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||| |    
T  12597067 tagtccctacaaattttttattcacgtttagtccctatttgcattttatagggactattttggaggactaaatatatccattttttgtaaaatgttttca 12596968  T
Q  205 aaatagagattattcttacaaactacaatatttt 238  Q
    ||||||||| || | |||||||||||||||||||    
T  12596967 aaatagagactaattttacaaactacaatatttt 12596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 10467436 - 10467570
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 201  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| ||||    
T  10467436 tttagtccttacaaaaaatttattcatttttagtccctatttgcattttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttt 10467535  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | ||||||| || |||||||||||  |||||||||    
T  10467536 tcaaaatagggactattcttacaagttacaatatt 10467570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 32797130 - 32797017
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||| || ||||||||  ||||||||||||| ||||| ||||||  || ||||||    
T  32797130 tttattcacttttagtccctaattgcattttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattct 32797031  T
Q  221 tacaaactacaata 234  Q
    ||||||||||||||    
T  32797030 tacaaactacaata 32797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 39344781 - 39344665
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| | || ||||| ||||| ||||| ||||||   | |||||    
T  39344781 atttattcacttttagtccctatttacattttatagagactattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattc 39344682  T
Q  220 ttacaaactacaatatt 236  Q
    |||||||||||||||||    
T  39344681 ttacaaactacaatatt 39344665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 26938819 - 26938941
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||| | |||||| |  |||| |||||    
T  26938819 tttagtccctacaaaaaatttattcacttttagtccctatttgcattttaaagggactattttgaaggactaaaagtgtccattttat-aaaaaagtttt 26938917  T
Q  203 aaaaatagagattattcttacaaa 226  Q
     ||||||| || ||||||||||||    
T  26938918 caaaatagggactattcttacaaa 26938941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 33038408 - 33038297
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttac 223  Q
    |||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||| ||||||| ||||| |||||||  | |||||||||    
T  33038408 attcgcttttagtccctatttgaattttatagggactatcttg-agaactaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttac 33038310  T
Q  224 aaactacaatatt 236  Q
    ||||| |||||||    
T  33038309 aaactgcaatatt 33038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 17219673 - 17219791
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattatt 218  Q
    |||||||||||||||||||||||||||| | || |||||||| ||||||| ||||||| ||| || ||||||||| || ||||| ||||||| || ||||    
T  17219673 atttattcacttttagtccctatttgcactgtaaagggactattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatt 17219772  T
Q  219 cttacaaactacaatattt 237  Q
     |||||||||| |||||||    
T  17219773 tttacaaactaaaatattt 17219791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 17153735 - 17153669
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  17153735 attcacttttagtccctatttgcattttagagggactatcttggaggactaaaagtatccatttttt 17153669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 8026231 - 8026105
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa-atgttt 201  Q
    ||||||||||| |||  ||||||||||||||| ||  |||||||||||||||||||||  ||||||| ||||||||| |  |||||| |||||  | |||    
T  8026231 tttagtccctataaaaaatttattcacttttactctttatttgcattttatagggact--tttggagtactaaaagtgtcaatttttcgtaaattttttt 8026134  T
Q  202 taaaaatagagattattcttacaaactac 230  Q
    | ||||||| || ||||||||||||||||    
T  8026133 ttaaaatagggactattcttacaaactac 8026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 42023957 - 42024073
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||| ||||||||| | ||| |||||||||| |  ||  |||||| || |||| |    
T  42023957 tttattcatttttagtccctatttgctttttatatggactattttggaggactaaaagtgtacatattttgtaaaaagaattttaaatagggactattat 42024056  T
Q  221 tacaaactacaatatttt 238  Q
    ||| ||||||||||||||    
T  42024057 tac-aactacaatatttt 42024073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 33695318 - 33695214
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||||| ||||| ||  |||||  ||||||||| ||||| ||||||| | ||||| |||||| |||||||||||| |||| |||||| ||| ||||||    
T  33695318 tttattcatttttaatctttatttatattttatagagactattttggaggaataaaaatattcagtttttgtaaaatcttttcaaaataaagactattct 33695219  T
Q  221 tacaa 225  Q
    |||||    
T  33695218 tacaa 33695214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 16483963 - 16483876
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 210  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||  ||||||| ||| || ||||||| ||| ||||| |||||||    
T  16483963 tattcacttttagttcctatttgcattttacagagactattttggatgactaaaaatatccaatttttgttaaaagttttcaaaatag 16483876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 17156948 - 17157014
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    ||||||| ||||||||||||||||||||| ||||| ||  |||||| ||||||||||| ||||||||    
T  17156948 attcactcttagtccctatttgcattttaaagggattatcttggaggactaaaagtatccatttttt 17157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 24916031 - 24916119
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 231  Q
    ||||||||||||||| |||| ||||||| ||||||| ||| |||||||| ||||| ||||  ||||||| || |||| ||||||||||||    
T  24916031 tttgcattttataggaactattttggaggactaaaaatatccattttttctaaaaagtttccaaaatag-gactatttttacaaactaca 24916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 35054983 - 35055057
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcatttt-atagggactagtttggagaactaaaa 177  Q
    |||||| ||||||||  ||||||||| ||||||||| || ||||||||| |||||||||| |||||||||||||||    
T  35054983 tttagttcctacaaaa-atttattcatttttagtccttaattgcatttttatagggactattttggagaactaaaa 35055057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 17143179 - 17143142
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17143179 attcacttttagtccctatttgcattttagagggacta 17143142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 24292165 - 24292257
Alignment:
Q  134 agtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 227  Q
    |||||||||||| |||||| |||||||| ||| ||| ||||||||||| |||||||| |||||   ||| ||||||| || | |||||||||||    
T  24292165 agtccctatttgtattttacagggacta-ttttgaggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaac 24292257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 16089900 - 16089764
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||| |||||    
T  16089900 tttagtccttacaaattttttattcacttttagtccatatttgcattttatagggactattttagaggactaaaagtacccattttttgtaaaaagtttt 16089801  T
Q  203 aaaaatagagattattcttacaaactacaatattttt 239  Q
    ||||| ||||| ||||||||||||||| |||||||||    
T  16089800 aaaaacagagactattcttacaaactataatattttt 16089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 15070134 - 15069998
Alignment:
Q  103 tttagtccctacaaatta-tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 201  Q
    |||||||||||||||  | |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||| |||||||||||||| ||||    
T  15070134 tttagtccctacaaaaaaatttattcacttttagtccctatttacattttatagagactattttgaaggactaaaaatatccattttttgtaaaaagttt 15070035  T
Q  202 taaaaatagagattattcttacaaactacaatatttt 238  Q
    | ||||| |||| |||| |||||||||||||||||||    
T  15070034 tcaaaatcgagactattattacaaactacaatatttt 15069998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 19343767 - 19343631
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||  ||||||||||||| |||||    
T  19343767 tttaggccctgcaaaaaatttattcacttttagtccctatttgcattttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttt 19343668  T
Q  203 aaaaatagagattattcttacaaactacaatattttt 239  Q
     ||||||   | |||| ||||||||||||||||||||    
T  19343667 taaaatatgaactatttttacaaactacaatattttt 19343631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 36235969 - 36235836
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||| ||||||| | ||||| |||||||||||| ||||| |||||    
T  36235969 tttagtccctacaaattttttattcatttttagtccttatttgcattttataaggactattttggaggaataaaaatattcattttttataaaaagtttt 36235870  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||| | || | ||||||||||||| ||||||    
T  36235869 taaaatggggactgttcttacaaactaaaatatt 36235836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 5459091 - 5459223
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||  |||     
T  5459091 tttagtccctacaatttttttattcatttttaatccctatttgcattttatagggactattttggaggaataaaagtattcattttttgtagaaaattta 5459190  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
    |||||||| ||  ||||||| |||||| ||||||    
T  5459191 aaaaataggga-cattcttataaactataatatt 5459223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 1298911 - 1298817
Alignment:
Q  101 aatttagtccctacaaatta--tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 196  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||||||||||||||    
T  1298911 aatttagtccctacaaaaaaaatttattcacttttagtccctatttgcattttatagggactattttagag---taaaagtattcattttttgtaaaa 1298817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 26724327 - 26724196
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 201  Q
    ||||| ||||| |||  |||||||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||    
T  26724327 tttagcccctataaaaaatttattcacttttagtctctattttcattttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttt 26724228  T
Q  202 taaaaatagagattattcttacaaactacaat 233  Q
    | ||||||| || | |||||| ||| ||||||    
T  26724227 tcaaaatagggactgttcttataaattacaat 26724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38948719 - 38948632
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaata 209  Q
    |||||||||||| ||||||||||| ||||||||||||||| || || | ||||||||| | |||||||||||||| ||||| ||||||    
T  38948719 ttattcacttttggtccctatttgaattttatagggactatttgggtggactaaaagtgtccattttttgtaaaaagtttttaaaata 38948632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 6502345 - 6502283
Alignment:
Q  140 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||| |||||    
T  6502345 tatttacattttatagggactattttggaggactaaaagtatccaatttttgtaaaaagtttt 6502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 35270806 - 35270758
Alignment:
Q  184 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaa 232  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  35270806 attttttgttaaaagttttcaaaatagagattattcttacaaactacaa 35270758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 38607494 - 38607378
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattc 219  Q
    |||||| |||||||||||| ||||||||||||||| ||||| |||| |  ||||||| |||  ||||||| |||| | ||||| ||||||  || |||||    
T  38607494 tttatttacttttagtcccgatttgcattttatagagactattttgaaagactaaaaatatatattttttggtaacaagttttcaaaataaggactattc 38607395  T
Q  220 ttacaaactacaatatt 236  Q
    | | |||||||||||||    
T  38607394 taaaaaactacaatatt 38607378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 30403539 - 30403647
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatag-ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||||||||||||   ||||| ||| |||||  |||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||  || ||||||    
T  30403539 ttattcacttttagtttatatttacatgttataaaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattct 30403638  T
Q  221 tacaaacta 229  Q
    |||||||||    
T  30403639 tacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 14820414 - 14820501
Alignment:
Q  149 tttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||| |||||| |||| || |||||||||   |||||||| ||||| ||||| ||||||  ||||||| |||||||||||| ||||    
T  14820414 tttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactacattatt 14820501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 26188812 - 26188843
Alignment:
Q  204 aaaatagagattattcttacaaactacaatat 235  Q
    ||||||||||||||||||||||||||||||||    
T  26188812 aaaatagagattattcttacaaactacaatat 26188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 34005654 - 34005709
Alignment:
Q  140 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa 195  Q
    |||||||||||||||||||||| |||  || ||||||| ||| |||||||||||||    
T  34005654 tatttgcattttatagggactattttaaaggactaaaaatatacattttttgtaaa 34005709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 34784121 - 34784027
Alignment:
Q  141 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    ||||| |||||||||| |||| |||| || |||||||||||| |||||||  |||| ||||| |||||| ||| |||||| | ||| |||||||||    
T  34784121 atttgtattttataggaactattttgaaggactaaaagtatt-attttttagaaaaagttttcaaaataaagaatattctaataaattacaatatt 34784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 39058478 - 39058540
Alignment:
Q  171 actaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 233  Q
    ||||||||| | |||| ||||||||| ||||| ||||||  || |||||||||||||||||||    
T  39058478 actaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaat 39058540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 5159469 - 5159566
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattttt 239  Q
    ||||||||||||||  | || ||||||| |||| |||||| |||||||||| ||| ||||| ||||||  || |||| ||| |||||| |||| ||||    
T  5159469 tttgcattttatagatattattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataataatttt 5159566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 39057143 - 39057200
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 168  Q
    |||||||  ||||||||||||||| ||| ||||| |||||||| ||||||| ||||||    
T  39057143 ctacaaaaaatttattcacttttaatccttatttacattttattgggactattttgga 39057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 44446805 - 44446941
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| |||||    
T  44446805 tttagttcttacaaaatttttattcacttttagtccctatttgcattttatagggactattttggaggactaaaagtacacattttttgtaaaaagtttt 44446904  T
Q  203 aaaaatagagattattcttacaaactacaatattttt 239  Q
     |||| ||||| ||||||||||||||| |||||||||    
T  44446905 caaaacagagactattcttacaaactataatattttt 44446941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 28769459 - 28769592
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||| |||||| ||||||| | |||||||||  ||||| ||||||| |||||    
T  28769459 tttaatccctataaaaaatttattcacttttagtccttatttgcattttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttt 28769558  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||||| ||| ||||||||||||||||||||||    
T  28769559 taaaataaagactattcttacaaactacaatatt 28769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 50334584 - 50334723
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaat--g 198  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||   |    
T  50334584 aatttagtccctacaaaaaatttattcacttttagttcctatttgcattttatagggactattttagaggactaaaaatatccattttttgtaaaaaaag 50334683  T
Q  199 ttttaaaaatagagattattcttacaaactacaatatttt 238  Q
    | || |||||||  | || | |||||||||||||||||||    
T  50334684 tattcaaaataggaactaattttacaaactacaatatttt 50334723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 34359546 - 34359411
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||||||||| | ||||||| |||||||||||||||  |||| || ||||||| ||| |||||||||||||| |||||    
T  34359546 tttagtccctacaaaaattttattcacttttaattcctatttacattttatagggacttttttgaaggactaaaattatccattttttgtaaaaagtttt 34359447  T
Q  203 aaaaatagagattattcttacaaactacaatatttt 238  Q
     |||| || ||  ||| |||||||||| ||||||||    
T  34359446 caaaacagggaccatttttacaaactataatatttt 34359411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 20315101 - 20314970
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||||||| | ||||||| |||  ||| ||  |||||||||||||  ||||    
T  20315101 tttagtctctataaaaaatttattcacttttagtccctatttacattttatagggacaattttggagtact--aagcataaattttttgtaaaaaatttt 20315004  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||||||||| |||| ||||||| | |||||||    
T  20315003 caaaatagagactattattacaaaattcaatatt 20314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 38673254 - 38673370
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat-tcattttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||||||||| ||| ||  ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| |||||| ||| ||  | |||||    
T  38673254 tttattcacttttagtctctacttatattttatggggactattttggaggactaaaagtatctatttttttgtaaaaggttttacaaacagtaaatattc 38673353  T
Q  220 ttacaaactacaatatt 236  Q
    ||||||| |||||||||    
T  38673354 ttacaaattacaatatt 38673370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 44648235 - 44648123
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    |||||||||||||||| ||||||| | ||||||||||||| ||| ||| |||||||||||  |  |||||||||| ||||| ||||||  |  ||| |||    
T  44648235 ttattcacttttagtctctatttgaactttatagggactatttttgaggactaaaagtatcaa--ttttgtaaaaagttttcaaaataaggtctatactt 44648138  T
Q  222 acaaactacaatatt 236  Q
    |||||||||||||||    
T  44648137 acaaactacaatatt 44648123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 39340965 - 39340851
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||| |  |||||| |||||||||  ||||| ||||||| ||||||||||  ||||||||||||||   ||  ||||||| || |||| ||    
T  39340965 ttattcacttttactttctattttcattttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactattttt 39340868  T
Q  222 acaaactacaatatttt 238  Q
    |||||||||||||||||    
T  39340867 acaaactacaatatttt 39340851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 52423210 - 52423102
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaact-aaaagtattcattttttgtaaaatgttt 201  Q
    |||| |||||| |||  ||||||| |||||||| ||||||||||||||||||||| |||  |||||| ||| |||||||| |||||||  ||||| ||||    
T  52423210 tttaatccctataaaaaatttatttacttttagcccctatttgcattttataggggctatattggaggactaaaaagtatccatttttaataaaaagttt 52423111  T
Q  202 taaaaatag 210  Q
    | |||||||    
T  52423110 tcaaaatag 52423102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 17269020 - 17268915
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttg-taaaatgttttaaaaatagagattattcttacaaact 228  Q
    ||||| || |||||| ||||||||| ||| || |||  |||| ||||||||||||||||||  ||||||||||  |||||| ||| |||| |||||||||    
T  17269020 ttttaatctctattttcattttatatggattattttttagaattaaaagtattcatttttttataaaatgtttataaaatatagactatttttacaaact 17268921  T
Q  229 acaata 234  Q
    ||||||    
T  17268920 acaata 17268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 41544534 - 41544605
Alignment:
Q  119 tatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    |||||||||||||||||||||||| ||||||||| ||| |||| ||||||  | ||||||| | ||||||||    
T  41544534 tatttattcacttttagtccctatatgcattttacaggaactattttggaagattaaaagtgtccatttttt 41544605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 45743891 - 45743817
Alignment:
Q  157 gactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 231  Q
    ||||| ||||||| || |||||| | |||||||||||||| ||||| ||||||| ||  ||||||||||||||||    
T  45743891 gactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactaca 45743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 2382870 - 2382915
Alignment:
Q  173 taaaagtattcattttttgtaaaatgttttaaaaatagagattatt 218  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  2382870 taaaagtattcattttttgtaaaaagttttcaaaatagagaatatt 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 20336992 - 20336927
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 168  Q
    ||||| ||||| |||  ||||||||||||||||| |||||||  ||||||||||||| | ||||||    
T  20336992 tttagcccctataaaaaatttattcacttttagttcctatttatattttatagggacaattttgga 20336927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 16876518 - 16876466
Alignment:
Q  184 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||||||||  | |||| ||||||| || ||||||||||||||||||||||    
T  16876518 attttttgtaatttttttttaaaatagggactattcttacaaactacaatatt 16876466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 17957246 - 17957109
Alignment:
Q  102 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 201  Q
    ||||||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  17957246 atttagtccttataaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 17957147  T
Q  202 taaaaatagagattattcttacaaactacaatattttt 239  Q
    | |||| ||||| ||||||||||||||| |||||||||    
T  17957146 tcaaaacagagactattcttacaaactataatattttt 17957109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 17157991 - 17158114
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||| ||| ||| |||| |||||| |||||||||||||| |||||    
T  17157991 tttagtccctacaaaaaaattattcacttttagtccctatttgcatcttatagagactacttttgaggactacaagtatccattttttgtaaaaagtttt 17158090  T
Q  203 aaaaatagagattattcttacaaa 226  Q
     |||||||||||||||||||||||    
T  17158091 caaaatagagattattcttacaaa 17158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 6198025 - 6197898
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||| ||   ||||||||||||| |||| ||||| |||||||||||||||| ||||||| | ||||||| | |||||||| ||||| |||||    
T  6198025 tttagtccctacgaaaagtttattcacttttggtccttatttacattttatagggactattttggaggaataaaagtgtccattttttctaaaaagtttt 6197926  T
Q  203 aaaaatagagattattcttacaaactac 230  Q
     |||||||||| ||||||||||||||||    
T  6197925 caaaatagagactattcttacaaactac 6197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 4254508 - 4254626
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||| ||||||| ||| ||||| ||||||| | |||||| |||||||   ||||||| | |||||||||||||  ||||| ||||||| ||||||| |    
T  4254508 tttatttacttttaatccttattttcattttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttt 4254607  T
Q  221 tacaaactacaatattttt 239  Q
    ||||||||||| |||||||    
T  4254608 tacaaactacagtattttt 4254626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 10313495 - 10313395
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 229  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |  ||||| | | |||| |||| || |||| || |||||||||||||||    
T  10313495 ttttagtccttatttgcattttatagggactattttggaggactaaaagtgtatattttcttttaaatattttcaatatagggactattcttacaaacta 10313396  T
Q  230 c 230  Q
    |    
T  10313395 c 10313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 24672483 - 24672352
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||||| || |||||||||||||| ||| | |||||| ||||||| ||||||| |||   |||||| | ||  |||||    
T  24672483 tttagtccctacaaaaattttattcactattggtccctatttgcatcttaaatggactattttggaggactaaaaatatctttttttttttaa--gtttt 24672386  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||||||||| |||| ||||||| |||||||||    
T  24672385 taaaatagagactattattacaaattacaatatt 24672352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 4408948 - 4409058
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||| ||| |||||| | |||||||||||||||| ||||||| |||||||||||||||| |||||| ||||          ||||||||||||| |||||    
T  4408948 tttaatccttacaaaatttttattcacttttagttcctatttacattttatagggactattttggaaaact----------attttttgtaaaaagtttt 4409037  T
Q  203 aaaaatagagattattcttac 223  Q
     |||||||||| |||||||||    
T  4409038 caaaatagagactattcttac 4409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 34187205 - 34187125
Alignment:
Q  156 ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||| |||| || || ||||||||||||||||| ||| | ||||| |||||||||| ||||||||| ||||||||||||    
T  34187205 ggactattttgaaggaccaaaagtattcattttttttaacaagttttcaaaatagagactattcttacgaactacaatatt 34187125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 30465127 - 30465243
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||| |||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  |||| ||||||| || |||||    
T  30465127 atttattcactcttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttttaaaatagggactattc 30465226  T
Q  220 ttacaaactacaatatt 236  Q
    ||||||||| |||||||    
T  30465227 ttacaaacttcaatatt 30465243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 12611994 - 12611904
Alignment:
Q  116 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaa 207  Q
    |||| |||||||||||||||| | ||||| |||||||||| ||||| ||||| | || |||| |||| ||||||||||||| | ||||||||    
T  12611994 aattttttattcacttttagttc-tattttcattttatagtgactattttggtggacaaaaaatattaattttttgtaaaaagatttaaaaa 12611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 10516584 - 10516655
Alignment:
Q  164 ttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||| ||||||||||| ||| |||||||||| ||| | ||| ||| || ||||||||||||||||||||||    
T  10516584 ttggaggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatatt 10516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 5644646 - 5644753
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  ||||||||||| |||||||||| || ||| ||||||  |||| ||||||| ||||||| |||   |||||||| ||| |||||    
T  5644646 tttagtctctataaaacatttattcactcttagtccctacttacatcttatagacactattttggaggactaaaattataatttttttgtcaaaagtttt 5644745  T
Q  203 aaaaatag 210  Q
     |||||||    
T  5644746 taaaatag 5644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 2538695 - 2538638
Alignment:
Q  178 gtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||||||||||||||| | |||||||| ||| ||| |||||||||||||| ||||||    
T  2538695 gtattcattttttgtaaatttttttaaaa-tagggatcattcttacaaactataatatt 2538638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 12339008 - 12338950
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||| ||||||||| |||||||||||||||||  | |||| ||||||||| |||||    
T  12339008 tttagtcgctacaaattttttattcacttttagtctttgtttgtattttatagagacta 12338950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 20132270 - 20132133
Alignment:
Q  102 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 201  Q
    ||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  20132270 atttagttcttacaaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 20132171  T
Q  202 taaaaatagagattattcttacaaactacaatattttt 239  Q
    | |||| ||||| |||||||||||| || |||||||||    
T  20132170 tcaaaacagagactattcttacaaattataatattttt 20132133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 28098727 - 28098618
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt-aaaatgttttaaaaatagagattattct 220  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||| ||||| ||||||  |||||||      
T  28098727 ttatttacttttagtccctatttgcattttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttc 28098628  T
Q  221 tacaaactac 230  Q
    ||||||||||    
T  28098627 tacaaactac 28098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 13009317 - 13009451
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 201  Q
    |||||||||||||||   |||||||||  ||| || |||||| ||||||| |||||||| ||||||| |||||||||||||| |||||||||||| |||     
T  13009317 tttagtccctacaaaagttttattcacaattaatctctatttacattttacagggactaatttggaggactaaaagtattcacttttttgtaaaaagtta 13009416  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | ||||||  || ||||||||||||||||||||||    
T  13009417 ttaaaataacgactattcttacaaactacaatatt 13009451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 11297951 - 11297838
Alignment:
Q  126 tcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttaca 224  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| ||||||||||| |||||||| ||| || ||||| ||||||| || |||| |||||    
T  11297951 tcactttttgtccctatttgtattttaaagggactattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttaca 11297852  T
Q  225 aactacaatatttt 238  Q
    ||||| ||||||||    
T  11297851 aactaaaatatttt 11297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 34471421 - 34471348
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 196  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| || |||||| |||| ||||||||||||||    
T  34471421 tattcacttttagtccctatttgcattttatagagactattttgaaggactaaaggtatacattttttgtaaaa 34471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 27567617 - 27567752
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat--tcattttttgtaaaatgtt 200  Q
    ||||||||||| |||   ||| |||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||| |||  |  ||||||| |||| |||    
T  27567617 tttagtccctaaaaaagttttcttcacttttaatccatatttgcattttataaggactattttggaggactaaaaatatactttttttttgcaaaaagtt 27567716  T
Q  201 ttaaaaatagagattattcttacaaactacaatatt 236  Q
    || ||||||  || ||||||||||||||||||||||    
T  27567717 ttcaaaataaggactattcttacaaactacaatatt 27567752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 48696532 - 48696447
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 210  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| | |||| ||||| ||||| |||||||    
T  48696532 attcacttttagtccctatttgcattttatagagactattttggaggactaaaaatattc-tgttttctaaaaagtttttaaaatag 48696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 30851589 - 30851722
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  |||||||||||||||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  ||||    
T  30851589 tttagtctctataaaacatttattcacttttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttt 30851688  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||| || |||||||||||||| |||||||    
T  30851689 taaaatagggactattcttacaaacttcaatatt 30851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 33992019 - 33991899
Alignment:
Q  115 aaattatttattcacttttagtccctatttgcattttatagggactagtttggagaa-ctaaaagtattcattttttgtaaaatgttttaaaaatagaga 213  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||| || |||||||||   |||| ||||||||||||||||||    || |||||| |||    
T  33992019 aaattttttattcacgtttagtccctatttgtattttataaggaatattttggagaataaaaaaatattcattttttgtaaaaaaaattcaaaatataga 33991920  T
Q  214 ttattcttacaaactacaata 234  Q
      ||||||| |||||||||||    
T  33991919 ccattcttaaaaactacaata 33991899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 39596738 - 39596786
Alignment:
Q  148 ttttatagggactagtttggagaactaaaagtattcattttttgtaaaa 196  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  39596738 ttttatagagactattttggagaactaaaagtattcattttttgtaaaa 39596786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 22485125 - 22485182
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 161  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  22485125 tttagtccgtacaaatt-tttatttacttttagtccctatttgcattttataaggacta 22485182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 25067828 - 25067734
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 236  Q
    |||||||||| ||| ||||| ||||||  ||||||||||| |||||||||||||  ||||| ||||||  || |||| |||||||||| ||||||    
T  25067828 tttgcattttctagagactattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatatt 25067734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 25411518 - 25411633
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctta 222  Q
    ||||| ||||||||| || |||  |||||||||| |||| ||| ||||| ||||| ||| |||||||   |||| || || ||||||  || ||||||||    
T  25411518 tattctcttttagtcactgtttatattttataggaactattttagagaattaaaaatatccatttttgtaaaaaagtatttaaaatattgactattctta 25411617  T
Q  223 caaactacaatatttt 238  Q
    ||||||||||||||||    
T  25411618 caaactacaatatttt 25411633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 12925389 - 12925313
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 218  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||||||||||||  |||||||    
T  12925389 tttgctttttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattatt 12925313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 20986141 - 20986008
Alignment:
Q  107 gtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaa 204  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  |  |||||||||||| ||||| |    
T  20986141 gtccctacaaaaaatttatttacttttagtccttatttgcattttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttca 20986042  T
Q  205 aaatagagattattcttacaaactacaatatttt 238  Q
    |||||| || ||||||| ||||||||||||||||    
T  20986041 aaatagggactattcttgcaaactacaatatttt 20986008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 33752913 - 33753046
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||| ||||||||| || |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| |   |||    
T  33752913 tttaatccctacaatttttttattcacttttagtccttatttacattttatagggactattttggagaagtaaaagtgttcattttttgtaataaagttt 33753012  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||| ||  |||||||||||||||||||||    
T  33753013 caaaatagtgaccattcttacaaactacaatatt 33753046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 29307555 - 29307642
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||    
T  29307555 tttagtccctacaaattttttattaactcttagtccctatttgcattttatagggactattttggaggactaaatatatccatttttt 29307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 13393006 - 13392890
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgt-aaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||||||||| || |||||||| | |||| ||||||||||||||| ||| || |||||||| |||| ||||| ||||||| || |||| ||    
T  13393006 attcacttttagtccctatatgtattttatatgaactattttggagaactaaaattatccatttttttgtaaaaaagtttttaaaatagggactattttt 13392907  T
Q  222 acaaactacaatatttt 238  Q
    |||||||||||||||||    
T  13392906 acaaactacaatatttt 13392890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 16545363 - 16545497
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||  ||||||  ||||||||||||||| | || ||||||||||| || |||||| ||||||| ||||||| ||| ||||||||||| || |||||    
T  16545363 tttagtctgtacaaaaaatttattcacttttactaccaatttgcattttgtaaggactattttggaggactaaaaatatccattttttgtataaagtttt 16545462  T
Q  203 aaaaatagagattattcttacaaactacaatatttt 238  Q
     ||||||| ||  ||| ||| |||||||||||||||    
T  16545463 caaaatagggaccattttta-aaactacaatatttt 16545497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 37470903 - 37470983
Alignment:
Q  147 attttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 227  Q
    ||||||||| ||||| ||||||| |||||||| || |||||||||||||| |||||  ||||||  | |||||||||||||    
T  37470903 attttatagagactattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 29103057 - 29102970
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    |||| ||| ||||||  ||||||||||||||||||| ||||||| ||||||||  |||| ||||||| ||||||| |||  |||||||    
T  29103057 tttaatccatacaaaaaatttattcacttttagtccttatttgctttttatagatactattttggaggactaaaaatatctatttttt 29102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 23230836 - 23230894
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||||||||||| | ||||||||||||||||| |||| | ||||||||| ||||||    
T  23230836 tttagtccctacaaaatttttattcacttttagtcactatatacattttataaggacta 23230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 35218215 - 35218150
Alignment:
Q  104 ttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggag 169  Q
    ||||| |||||||| | |||||| ||||||||||  ||||| |||||||||||||||| |||||||    
T  35218215 ttagttcctacaaaatttttatttacttttagtctttatttacattttatagggactattttggag 35218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 35954440 - 35954306
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattc-attttttgtaaaatgttt 201  Q
    |||||||||||||| || ||||||||||||||||||||| ||  ||||||||||| ||| ||||||| ||||||||| ||| ||||||  ||||| | ||    
T  35954440 tttagtccctacaatttttttattcacttttagtccctagttatattttataggggctattttggaggactaaaagttttcaatttttattaaaaagatt 35954341  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | | |||||||| ||||||||||||||||||||||    
T  35954340 ttataatagagactattcttacaaactacaatatt 35954306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 34904198 - 34904093
Alignment:
Q  131 tttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 230  Q
    |||||||||||||||||||||| | |||||| |||  || ||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||||||    
T  34904198 tttagtccctatttgcattttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactac 34904099  T
Q  231 aatatt 236  Q
    ||||||    
T  34904098 aatatt 34904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 8794770 - 8794655
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||  ||||||| | | |||||||||||||| ||||| ||||||| || ||||||    
T  8794770 tttattcacttttagtccctatttgcattttataggagctattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattct 8794671  T
Q  221 tacaaactacaatatt 236  Q
    ||| || |||||||||    
T  8794670 tacgaattacaatatt 8794655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 10077808 - 10077686
Alignment:
Q  116 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagaga 213  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||| ||| ||  |||||||||||| ||||| ||||||| ||    
T  10077808 aattttttattcacttttagtccatatttgtattttattgggactattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaataggga 10077709  T
Q  214 ttattcttacaaactacaatatt 236  Q
     |||| |||||||||||||||||    
T  10077708 ctattattacaaactacaatatt 10077686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 39293064 - 39293198
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 202  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||| |||||| ||||||| | ||||| ||| ||||||||  ||||||||||    
T  39293064 tttagtccctacaaaaaaattattcacttttagtccctattttcattttatatggactattttggaggaataaaaatatccatttttt-aaaaatgtttt 39293162  T
Q  203 aaaaatagagattattcttacaaactacaatatttt 238  Q
     |||||||  | |||| ||||||| |||||||||||    
T  39293163 taaaataggaactattattacaaattacaatatttt 39293198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 30640995 - 30641112
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| || ||||||||| || ||||| ||||||| || || |     
T  30640995 tttattcacttttagtccctatttgcattttaaagggactattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactactt 30641094  T
Q  220 ttacaaactacaatattt 237  Q
    |||||||||| |||||||    
T  30641095 ttacaaactaaaatattt 30641112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 6191285 - 6191172
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||||| | |||||| |||||||||  |||| ||||||||||||||  |||||||||||||||||| ||||| ||||||  || |||||||    
T  6191285 ttattcacttttagttcttatttgtattttataga-actattttggagaactaaacatattcattttttgtaaaaagttttcaaaatacggactattctt 6191187  T
Q  222 acaaactacaatatt 236  Q
    ||||| |||||||||    
T  6191186 acaaagtacaatatt 6191172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 24490520 - 24490638
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt----aaaatgttttaaaaatagagattat 217  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||||| |    ||||     | ||||||| ||||||    
T  24490520 ttattcacttttagtccctatttgcattttatagagactattttagaggactaaaagtatccattttttattaaaaaaaaaaaatcaaaatagggattat 24490619  T
Q  218 tcttacaaactacaatatt 236  Q
    |||||||||||||||||||    
T  24490620 tcttacaaactacaatatt 24490638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 31994684 - 31994809
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 210  Q
    |||||||  ||||||||| ||||| |||| ||||||||||||||||||||| ||||||| | || |||| | ||||||||  |||| ||||| ||||| |    
T  31994684 ctacaaaaaatttattcatttttaatcccaatttgcattttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattg 31994783  T
Q  211 agattattcttacaaactacaatatt 236  Q
     || |||||||||||| |||||||||    
T  31994784 ggactattcttacaaattacaatatt 31994809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 855752 - 855648
Alignment:
Q  136 tccctatttgcattttatagggactagtttgg-----agaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 230  Q
    |||||||||||||||||||||||||| |||||     || ||||||| |||||||||||||||||| ||||| ||||||  || ||||| ||||||||||    
T  855752 tccctatttgcattttatagggactattttggtctggaggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactac 855653  T
Q  231 aatat 235  Q
    |||||    
T  855652 aatat 855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 29242513 - 29242646
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggac---tagtttggagaactaaaagtattcattttttgtaaaatgt 199  Q
    |||||||| ||||||  | |||||||||||||| |||||||||||||||||||||||   || | ||| | |||||||||||  ||||||||||||| |     
T  29242513 tttagtccttacaaaaaaattattcacttttagcccctatttgcattttatagggactattattgtgggggactaaaagtatcgattttttgtaaaaag- 29242611  T
Q  200 tttaaaaatagagattattcttacaaactacaatat 235  Q
      | ||||||| || ||||||||||||||| |||||    
T  29242612 -gtcaaaatagggactattcttacaaactataatat 29242646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 27694475 - 27694574
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 210  Q
    |||||||  ||||||||||||||| ||||||||  ||||||||||||| || || | || ||||||| |||  ||||||||||||| ||||| |||||||    
T  27694475 ctacaaaaaatttattcacttttaatccctattcacattttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatag 27694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 434511 - 434607
Alignment:
Q  141 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattt 237  Q
    |||||||||||||||| |||| ||||||| || |||| ||| ||||||||  |||| ||||| |||| |  || ||||||||||||||  |||||||    
T  434511 atttgcattttataggaactattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaacttaaatattt 434607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 16894 - 16999
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||| ||||||| |||||| ||||| ||||||| || ||||||    
T  16894 tttattcacttttagtccctatttgtattttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattct 16993  T
Q  221 tacaaa 226  Q
    ||||||    
T  16994 tacaaa 16999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 152141 - 152256
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||| ||||||||||||| |||||||||||||||| ||||| |||| |  ||||||| ||||||||||||| || | ||||||||||||| || ||||||    
T  152141 tttactcacttttagtccttatttgcattttatagagactattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattct 152240  T
Q  221 tacaaactacaatatt 236  Q
    ||||| ||||||||||    
T  152241 tacaatctacaatatt 152256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 253697 - 253833
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 200  Q
    ||||||||| |||||||  | ||||||| ||||| || |||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||||||   |    
T  253697 aatttagtctctacaaaaaaattattcatttttaatctctatctgcattttatagggactattttggaggattaaaagtatccattttttgtaaaaaagt 253796  T
Q  201 ttaaaaatagagattattcttacaaactacaatatttt 238  Q
    || |||||||||| ||| ||||||||||| ||||||||    
T  253797 tt-aaaatagagactatccttacaaactataatatttt 253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 3418 - 3352
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||||||| ||||||||    
T  3418 attcacttttagtccctatttgcgttttagagggacaattttggaggactaaaagtatccatttttt 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 48396 - 48509
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||| |||||||||||| ||||| |||||||||| ||||| ||||||  ||||||||||| ||  |||||||||||| ||||| |||| || || | |||    
T  48396 ttatccacttttagtccatattttcattttatagagactattttggatgactaaaagtatccattttttttgtaaaaagttttcaaaagagggactgttc 48495  T
Q  220 ttacaaactacaat 233  Q
    ||| ||||||||||    
T  48496 ttataaactacaat 48509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 179 - 113
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 190  Q
    |||||||||||||| |||||| ||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  179 attcacttttagtctctatttacattttagagggactatcttggaggactaaaagtatccatttttt 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 5440 - 5553
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||||||| ||||||||||||||||||||||  |||||||| |||||||     ||||||| || ||||||||| || ||||| ||||||| || || |     
T  5440 tttattcatttttagtccctatttgcattttcaagggactattttggag-----aaagtatccatttttttgtataaagttttcaaaatagggactactt 5534  T
Q  220 ttacaaactacaatatttt 238  Q
    |||||||||| ||||||||    
T  5535 ttacaaactaaaatatttt 5553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 7458 - 7495
Alignment:
Q  115 aaattatttattcacttttagtccctatttgcatttta 152  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7458 aaattttttattcatttttagtccctatttgcatttta 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 363064 - 363140
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 218  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||| ||||||||  |||||||    
T  363064 tttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttctaaaaataaggattatt 363140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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