View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_366 (Length: 247)
Name: NF9288A_low_366
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_366 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 49289736 - 49289513
Alignment:
| Q |
15 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
114 |
Q |
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| T |
49289736 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg |
49289637 |
T |
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| Q |
115 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta |
214 |
Q |
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| T |
49289636 |
ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta |
49289537 |
T |
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| Q |
215 |
ctagctagtacaaacgattatatt |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
49289536 |
ctagctagtacaaacgattatatt |
49289513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 49296687 - 49296464
Alignment:
| Q |
15 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
114 |
Q |
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| T |
49296687 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg |
49296588 |
T |
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| Q |
115 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta |
214 |
Q |
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| T |
49296587 |
ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta |
49296488 |
T |
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| Q |
215 |
ctagctagtacaaacgattatatt |
238 |
Q |
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| T |
49296487 |
ctagctagtacaaacgattatatt |
49296464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 49303417 - 49303232
Alignment:
| Q |
15 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
49303417 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggctt---g |
49303321 |
T |
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| Q |
115 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc |
203 |
Q |
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| T |
49303320 |
ttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
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