View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_369 (Length: 246)

Name: NF9288A_low_369
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_369
NF9288A_low_369
[»] chr4 (5 HSPs)
chr4 (101-239)||(37252927-37253065)
chr4 (104-238)||(37232684-37232815)
chr4 (113-192)||(37244881-37244960)
chr4 (108-238)||(37257059-37257198)
chr4 (196-238)||(37237700-37237742)
[»] chr6 (3 HSPs)
chr6 (107-191)||(14316682-14316766)
chr6 (107-192)||(14253954-14254039)
chr6 (107-186)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (107-184)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (106-181)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (107-186)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (145-185)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 37252927 - 37253065
Alignment:
Q  101 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaagg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  201 tccttcagaaggaggagtggagatggatgatggagtaag 239  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaag 37253065  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37232684 - 37232815
Alignment:
Q  104 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaaggtcc 203  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  204 ttcagaaggaggagtggagatggatgatggagtaa 238  Q
    ||||| ||||||||||||||| |||||||||||||    
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaa 37232815  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 37244881 - 37244960
Alignment:
Q  113 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 192  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgttt 37244960  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 37257059 - 37257198
Alignment:
Q  108 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg---ttttcggaaggtc-- 202  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||| ||   || || ||||||       
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  203 ----cttcagaaggaggagtggagatggatgatggagtaa 238  Q
        |||||||||||| ||| |||||||||||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaa 37257198  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 37237700 - 37237742
Alignment:
Q  196 gaaggtccttcagaaggaggagtggagatggatgatggagtaa 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaa 37237742  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 14316682 - 14316766
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgtt 191  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 14253954 - 14254039
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 192  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgttt 14254039  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

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Target: scaffold0902 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 184  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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Target: scaffold1652 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  106 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 181  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

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Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  145 acagcagcagatccggcaacggtaaatctgttcaaagcggc 185  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

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