View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_37 (Length: 424)
Name: NF9288A_low_37
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 33498967 - 33499377
Alignment:
| Q |
9 |
tggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
108 |
Q |
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| T |
33498967 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33499066 |
T |
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| Q |
109 |
ttctcttctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagctttacttggcgcaaactcgatggaggaaa |
208 |
Q |
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| T |
33499067 |
ttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaa |
33499166 |
T |
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| Q |
209 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tccta |
307 |
Q |
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| T |
33499167 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttccga |
33499266 |
T |
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| Q |
308 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttccaat |
407 |
Q |
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| T |
33499267 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaat |
33499366 |
T |
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| Q |
408 |
attgtaaactg |
418 |
Q |
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| T |
33499367 |
attgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 33485756 - 33485867
Alignment:
| Q |
9 |
tggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
108 |
Q |
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| T |
33485756 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33485855 |
T |
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| Q |
109 |
ttctcttctctt |
120 |
Q |
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| T |
33485856 |
ttctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
117 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagctttacttggcgcaaactcgatggaggaaacttacaag |
216 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
217 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
271 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
332 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttcc |
404 |
Q |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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