View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_374 (Length: 245)
Name: NF9288A_low_374
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_374 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47886459 - 47886215
Alignment:
| Q |
1 |
gttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagacaaggtaacatgataaaatc |
100 |
Q |
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| T |
47886459 |
gttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagagaaggtaacatgataaaatc |
47886360 |
T |
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| Q |
101 |
tatgtttattctatgacattaatggagatgcaccgttagtataatttagttttacaccgtcattcaatgagaactcatggcactgcaacataagtgttat |
200 |
Q |
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| T |
47886359 |
tatgtttattctatgacattaatggagatgcaccgttagtataatttagttttacaccgtcattcaatgagaactcatggcactgcaacataagcgttat |
47886260 |
T |
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| Q |
201 |
tttgctactgccattaaaaaataatcgcaaattattgaattttca |
245 |
Q |
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| T |
47886259 |
tttgctactgccattaaaaaataatcgcaaattattgaattttca |
47886215 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 4622777 - 4622864
Alignment:
| Q |
4 |
gacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagacaaggtaacat |
91 |
Q |
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| T |
4622777 |
gacttaatggttgccggacttcaaattttccctgttgatagacatgcaagatttagatatttaaagatgcagacagacaaggtgacat |
4622864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 18359388 - 18359356
Alignment:
| Q |
146 |
ttagttttacaccgtcattcaatgagaactcat |
178 |
Q |
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| T |
18359388 |
ttagttttacaccgacattcaatgagaactcat |
18359356 |
T |
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