View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_376 (Length: 245)
Name: NF9288A_low_376
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_376 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 12122750 - 12122859
Alignment:
| Q |
132 |
tgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagggacataatgaagattactttagacagaatccataaaaccaata |
231 |
Q |
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| T |
12122750 |
tgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagagacataatgaagattactttagacagaatccataaaaccaata |
12122849 |
T |
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| Q |
232 |
acaccaaact |
241 |
Q |
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||||| |||| |
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| T |
12122850 |
acaccgaact |
12122859 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 12122623 - 12122686
Alignment:
| Q |
5 |
ttcagctccaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtc |
68 |
Q |
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| T |
12122623 |
ttcagcttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtc |
12122686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 14692142 - 14692205
Alignment:
| Q |
5 |
ttcagctccaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtc |
68 |
Q |
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| T |
14692142 |
ttcagcttcaccattttgttactgaagctgtatccattgaacacaaataacaacaaaaattgtc |
14692205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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