View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_377 (Length: 245)
Name: NF9288A_low_377
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_377 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 40552681 - 40552464
Alignment:
| Q |
10 |
agatggacatcagctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacacttaaat |
109 |
Q |
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| T |
40552681 |
agatgaacatcagctgaatagtatatgcggtctccccgctaatcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacacttaaat |
40552582 |
T |
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| Q |
110 |
tcaaatcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaat |
209 |
Q |
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| T |
40552581 |
tcaaatcttgatttgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaattcctttggcgatgaaaagtcatcctatccaat |
40552482 |
T |
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| Q |
210 |
ctataaccccttcacctt |
227 |
Q |
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| T |
40552481 |
ctaaaaccccttcacctt |
40552464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 40570641 - 40570532
Alignment:
| Q |
114 |
atcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaatctat |
213 |
Q |
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| T |
40570641 |
atcttgatttgcttacagccagtagagtaagagcacagtgtggctacagaagaaatttgtcaaatcctttggagatgaataatcatccaattcaatctac |
40570542 |
T |
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| Q |
214 |
aaccccttca |
223 |
Q |
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| T |
40570541 |
acccccttca |
40570532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 40570755 - 40570702
Alignment:
| Q |
51 |
atcattctgagcaatcttctgtggttccaaataaagatgttgggcaatcacact |
104 |
Q |
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| T |
40570755 |
atcattctgagccaacttctgtggttccaaacaaagatgctgggcagtcacact |
40570702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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