View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_38 (Length: 422)
Name: NF9288A_low_38
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 4968754 - 4969162
Alignment:
| Q |
7 |
gcaaagagatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccatcgtgag |
105 |
Q |
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| T |
4968754 |
gcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtgag |
4968853 |
T |
|
| Q |
106 |
agacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaattc |
195 |
Q |
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| T |
4968854 |
agacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaattc |
4968953 |
T |
|
| Q |
196 |
ctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagattat |
295 |
Q |
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| T |
4968954 |
ctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagattat |
4969053 |
T |
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| Q |
296 |
c--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatca |
393 |
Q |
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| T |
4969054 |
cagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatca |
4969153 |
T |
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| Q |
394 |
aagaacaac |
402 |
Q |
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| T |
4969154 |
aagaacaac |
4969162 |
T |
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