View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_385 (Length: 244)

Name: NF9288A_low_385
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_385
NF9288A_low_385
[»] chr4 (5 HSPs)
chr4 (13-236)||(24666621-24666844)
chr4 (13-236)||(34941558-34941782)
chr4 (13-236)||(18363426-18363645)
chr4 (13-236)||(36599283-36599502)
chr4 (114-189)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (117-236)||(26240615-26240735)
chr1 (13-97)||(26240779-26240863)
[»] chr2 (2 HSPs)
chr2 (6-176)||(19697406-19697568)
chr2 (13-67)||(13265597-13265651)
[»] chr3 (2 HSPs)
chr3 (13-189)||(53242722-53242900)
chr3 (61-212)||(43479315-43479456)
[»] chr8 (1 HSPs)
chr8 (22-126)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 112  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  24666844 ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat 24666745  T
Q  113 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666744 ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 24666645  T
Q  213 accaatttcttggtgttgataact 236  Q
    ||||||||||||||||||||||||    
T  24666644 accaatttcttggtgttgataact 24666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 34941558 - 34941782
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 112  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||| |||||| |||||||    
T  34941558 ataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatctcttcat 34941657  T
Q  113 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 212  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34941658 cctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaatgacagga 34941757  T
Q  213 a-ccaatttcttggtgttgataact 236  Q
    | |||||||||||||||||||||||    
T  34941758 acccaatttcttggtgttgataact 34941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 18363645 - 18363426
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 112  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||||||    
T  18363645 ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat 18363546  T
Q  113 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 212  Q
    ||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18363545 cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga 18363450  T
Q  213 accaatttcttggtgttgataact 236  Q
    ||||||||||||||||||||||||    
T  18363449 accaatttcttggtgttgataact 18363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 36599283 - 36599502
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 112  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||||||    
T  36599283 ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat 36599382  T
Q  113 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 212  Q
    ||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36599383 cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga 36599478  T
Q  213 accaatttcttggtgttgataact 236  Q
    ||||||||||||||||||||||||    
T  36599479 accaatttcttggtgttgataact 36599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
Q  114 cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 189  Q
    ||||||||||||||||||||  || |||| | | | ||||||| ||||||||||||||| ||| ||||||||||||    
T  8752390 cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa 8752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
Q  117 ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc 215  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  26240735 ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc 26240636  T
Q  216 aatttcttggtgttgataact 236  Q
    |||||||||||||||||||||    
T  26240635 aatttcttggtgttgataact 26240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 26240863 - 26240779
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct 97  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  26240863 ataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct 26240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 19697406 - 19697568
Alignment:
Q  6 gaataatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt 105  Q
    |||||| |||| ||||||||||||||||| || |||||| || |||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  19697406 gaataaaatactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatt 19697504  T
Q  106 tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt 176  Q
    |||||||| ||||||||||| || |       |||| |||||||||||||| |||||||||||||||||||    
T  19697505 tcttcatcattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt 19697568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat 67  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  13265597 ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat 13265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 53242722 - 53242900
Alignment:
Q  13 ataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattatatttcttc 110  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || |  ||| |||| ||||||||||||| |||    
T  53242722 ataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattatatttgttc 53242821  T
Q  111 atccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 189  Q
    ||||| ||||||||   | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | ||||||||||    
T  53242822 atcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa 53242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
Q  61 agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa 160  Q
    ||||||| |||||||||| ||||  ||| |||| ||||||||||||||||||| | |||||||| |           |||||||||||||||||||||||    
T  43479456 agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa 43479368  T
Q  161 aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga 212  Q
    |||||||||||||||| | ||||||||||| |||| | || ||||||| ||||    
T  43479367 aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga 43479315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
Q  22 gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa 121  Q
    |||||| ||||||||  ||||||||| ||||  ||||||||||||| || ||||||| ||||  |||||||||||||||||||||| ||||| | |||||    
T  32566563 gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa 32566467  T
Q  122 ctcct 126  Q
    |||||    
T  32566466 ctcct 32566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University