View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_399 (Length: 243)

Name: NF9288A_low_399
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_399
NF9288A_low_399
[»] scaffold0090 (1 HSPs)
scaffold0090 (13-222)||(18062-18272)
[»] scaffold0247 (1 HSPs)
scaffold0247 (16-222)||(11238-11444)
[»] chr5 (14 HSPs)
chr5 (32-211)||(38144500-38144679)
chr5 (32-174)||(19512298-19512441)
chr5 (29-174)||(28370055-28370200)
chr5 (32-179)||(22751053-22751201)
chr5 (61-179)||(23528573-23528690)
chr5 (110-174)||(18407944-18408008)
chr5 (119-198)||(22438723-22438803)
chr5 (110-174)||(23111200-23111264)
chr5 (119-222)||(42961566-42961669)
chr5 (159-211)||(1856445-1856497)
chr5 (159-211)||(21674415-21674467)
chr5 (120-175)||(19236900-19236955)
chr5 (122-175)||(22461158-22461211)
chr5 (122-175)||(22467782-22467835)
[»] chr6 (23 HSPs)
chr6 (16-220)||(18800334-18800538)
chr6 (16-185)||(10986170-10986339)
chr6 (32-198)||(29614124-29614291)
chr6 (16-174)||(4477754-4477912)
chr6 (16-174)||(23839095-23839253)
chr6 (32-174)||(23057850-23057993)
chr6 (55-185)||(930085-930215)
chr6 (61-222)||(12168305-12168465)
chr6 (61-222)||(19785822-19785982)
chr6 (61-222)||(19878398-19878558)
chr6 (61-185)||(19287214-19287337)
chr6 (61-222)||(19884174-19884334)
chr6 (91-175)||(34639986-34640069)
chr6 (91-175)||(34646660-34646743)
chr6 (119-222)||(24512796-24512899)
chr6 (91-175)||(25469704-25469785)
chr6 (103-175)||(31252406-31252478)
chr6 (122-174)||(9187498-9187550)
chr6 (118-174)||(25348486-25348542)
chr6 (19-172)||(21565214-21565367)
chr6 (118-172)||(25598643-25598697)
chr6 (118-174)||(25397172-25397228)
chr6 (118-174)||(19471335-19471391)
[»] scaffold0924 (1 HSPs)
scaffold0924 (51-185)||(740-875)
[»] chr7 (27 HSPs)
chr7 (16-178)||(14422881-14423043)
chr7 (32-179)||(18873272-18873420)
chr7 (23-185)||(12709833-12709995)
chr7 (23-185)||(13122904-13123066)
chr7 (32-174)||(15168087-15168230)
chr7 (32-170)||(10895795-10895934)
chr7 (16-174)||(16009474-16009631)
chr7 (34-185)||(13743623-13743774)
chr7 (75-172)||(16677250-16677348)
chr7 (75-172)||(17651486-17651584)
chr7 (61-185)||(12590633-12590756)
chr7 (61-185)||(13007374-13007497)
chr7 (119-222)||(21230912-21231015)
chr7 (119-174)||(11382871-11382926)
chr7 (119-174)||(11389348-11389403)
chr7 (119-198)||(20311026-20311107)
chr7 (160-217)||(14945066-14945123)
chr7 (160-217)||(15372659-15372716)
chr7 (119-222)||(148619-148722)
chr7 (111-174)||(13679485-13679548)
chr7 (120-175)||(2971254-2971309)
chr7 (120-175)||(20906461-20906516)
chr7 (120-174)||(11311059-11311113)
chr7 (139-180)||(831628-831669)
chr7 (139-180)||(1196808-1196849)
chr7 (139-180)||(34958578-34958619)
chr7 (118-174)||(46625961-46626017)
[»] scaffold0025 (1 HSPs)
scaffold0025 (16-172)||(14398-14555)
[»] chr3 (30 HSPs)
chr3 (16-172)||(24192852-24193009)
chr3 (16-175)||(23370505-23370664)
chr3 (16-174)||(9534225-9534382)
chr3 (32-174)||(14762758-14762901)
chr3 (34-172)||(20247791-20247930)
chr3 (32-172)||(38310802-38310943)
chr3 (65-198)||(16801444-16801576)
chr3 (92-185)||(41455087-41455178)
chr3 (91-175)||(24933828-24933910)
chr3 (113-174)||(18929239-18929300)
chr3 (110-174)||(17240513-17240577)
chr3 (159-211)||(24122221-24122273)
chr3 (120-175)||(13302240-13302295)
chr3 (120-175)||(13323787-13323842)
chr3 (16-92)||(55499185-55499261)
chr3 (159-211)||(13967762-13967814)
chr3 (159-211)||(13973237-13973289)
chr3 (100-175)||(10389443-10389518)
chr3 (100-175)||(10414532-10414607)
chr3 (100-175)||(10421202-10421277)
chr3 (120-175)||(12033444-12033499)
chr3 (120-175)||(13312896-13312951)
chr3 (120-175)||(17131732-17131787)
chr3 (120-175)||(51301589-51301644)
chr3 (160-198)||(18127695-18127733)
chr3 (160-198)||(18135465-18135503)
chr3 (160-217)||(18718254-18718311)
chr3 (160-188)||(14543478-14543506)
chr3 (160-188)||(16829104-16829132)
chr3 (160-188)||(16837626-16837654)
[»] scaffold0026 (2 HSPs)
scaffold0026 (32-222)||(11802-11994)
scaffold0026 (16-175)||(111583-111741)
[»] scaffold0154 (1 HSPs)
scaffold0154 (101-222)||(30839-30960)
[»] chr2 (17 HSPs)
chr2 (36-222)||(26583744-26583929)
chr2 (29-174)||(6483627-6483772)
chr2 (29-174)||(6487094-6487239)
chr2 (16-174)||(19661454-19661611)
chr2 (91-175)||(5706023-5706106)
chr2 (71-174)||(23265093-23265197)
chr2 (71-174)||(23280161-23280265)
chr2 (71-174)||(21908311-21908414)
chr2 (160-222)||(6260124-6260186)
chr2 (16-172)||(23878905-23879060)
chr2 (19-174)||(23101463-23101618)
chr2 (76-184)||(26885139-26885246)
chr2 (167-222)||(19665026-19665081)
chr2 (19-172)||(23089057-23089210)
chr2 (118-174)||(24661576-24661632)
chr2 (120-175)||(10577-10632)
chr2 (120-175)||(25180929-25180984)
[»] chr1 (12 HSPs)
chr1 (16-174)||(20437024-20437182)
chr1 (61-222)||(41111977-41112137)
chr1 (110-174)||(32651563-32651627)
chr1 (110-174)||(18712790-18712854)
chr1 (119-174)||(19663517-19663572)
chr1 (118-174)||(20805320-20805376)
chr1 (119-174)||(11158093-11158148)
chr1 (118-172)||(10811785-10811839)
chr1 (120-175)||(20851132-20851187)
chr1 (120-175)||(20857759-20857814)
chr1 (120-175)||(21706276-21706331)
chr1 (120-175)||(21710818-21710873)
[»] scaffold0029 (1 HSPs)
scaffold0029 (32-198)||(111793-111960)
[»] scaffold0553 (1 HSPs)
scaffold0553 (16-175)||(10195-10354)
[»] scaffold0544 (1 HSPs)
scaffold0544 (16-175)||(1525-1684)
[»] chr8 (17 HSPs)
chr8 (29-175)||(44477532-44477678)
chr8 (29-175)||(44492690-44492836)
chr8 (23-185)||(23866518-23866680)
chr8 (16-172)||(8727735-8727891)
chr8 (61-185)||(17054533-17054656)
chr8 (110-174)||(23482053-23482117)
chr8 (119-222)||(14056516-14056619)
chr8 (119-222)||(27940804-27940907)
chr8 (118-174)||(18614271-18614327)
chr8 (119-222)||(25111976-25112079)
chr8 (118-174)||(39364919-39364975)
chr8 (120-174)||(29643386-29643440)
chr8 (159-211)||(30765873-30765925)
chr8 (151-217)||(21321125-21321192)
chr8 (151-217)||(21325723-21325790)
chr8 (120-175)||(24320670-24320725)
chr8 (118-174)||(21931696-21931752)
[»] scaffold0058 (1 HSPs)
scaffold0058 (34-198)||(206-368)
[»] scaffold1773 (1 HSPs)
scaffold1773 (32-182)||(1090-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (32-182)||(50091-50241)
[»] chr4 (13 HSPs)
chr4 (51-185)||(8045822-8045955)
chr4 (61-222)||(11848049-11848215)
chr4 (91-175)||(53483677-53483760)
chr4 (119-222)||(15408139-15408242)
chr4 (118-174)||(8834895-8834951)
chr4 (118-174)||(13888641-13888697)
chr4 (120-172)||(14486661-14486713)
chr4 (118-174)||(15245215-15245271)
chr4 (118-169)||(22724691-22724742)
chr4 (160-196)||(1650182-1650219)
chr4 (139-180)||(15747551-15747592)
chr4 (160-217)||(43284002-43284059)
chr4 (118-174)||(15308120-15308176)
[»] scaffold0117 (2 HSPs)
scaffold0117 (75-185)||(1887-1997)
scaffold0117 (75-185)||(8564-8674)
[»] scaffold0456 (2 HSPs)
scaffold0456 (104-179)||(916-991)
scaffold0456 (104-179)||(8061-8136)
[»] scaffold0796 (2 HSPs)
scaffold0796 (61-180)||(1727-1845)
scaffold0796 (61-180)||(5750-5868)
[»] scaffold0107 (1 HSPs)
scaffold0107 (119-222)||(40484-40587)
[»] scaffold0129 (1 HSPs)
scaffold0129 (91-181)||(45268-45357)
[»] scaffold0235 (1 HSPs)
scaffold0235 (121-222)||(22545-22646)
[»] scaffold0019 (1 HSPs)
scaffold0019 (119-222)||(135473-135576)
[»] scaffold0310 (1 HSPs)
scaffold0310 (119-198)||(17643-17723)
[»] scaffold0222 (1 HSPs)
scaffold0222 (110-174)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (110-174)||(116887-116951)
[»] scaffold0461 (1 HSPs)
scaffold0461 (110-174)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (110-174)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (110-174)||(101928-101992)
[»] scaffold0476 (1 HSPs)
scaffold0476 (16-172)||(3295-3452)
[»] scaffold0124 (1 HSPs)
scaffold0124 (119-174)||(34276-34331)
[»] scaffold0815 (1 HSPs)
scaffold0815 (123-185)||(1453-1515)
[»] scaffold0077 (1 HSPs)
scaffold0077 (16-172)||(3624-3780)
[»] scaffold2054 (1 HSPs)
scaffold2054 (85-185)||(680-780)
[»] scaffold0138 (1 HSPs)
scaffold0138 (118-174)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (111-174)||(1378-1441)
[»] scaffold0249 (2 HSPs)
scaffold0249 (167-222)||(2201-2256)
scaffold0249 (100-175)||(13894-13970)
[»] scaffold0139 (2 HSPs)
scaffold0139 (119-174)||(14997-15052)
scaffold0139 (160-198)||(26892-26930)
[»] scaffold0001 (1 HSPs)
scaffold0001 (97-184)||(493019-493105)
[»] scaffold0261 (1 HSPs)
scaffold0261 (120-221)||(23525-23624)
[»] scaffold0790 (1 HSPs)
scaffold0790 (153-185)||(5487-5519)
[»] scaffold0609 (1 HSPs)
scaffold0609 (103-175)||(5857-5929)
[»] scaffold0096 (1 HSPs)
scaffold0096 (118-178)||(39503-39563)
[»] scaffold0348 (2 HSPs)
scaffold0348 (120-175)||(9336-9391)
scaffold0348 (160-222)||(14606-14668)
[»] scaffold0127 (1 HSPs)
scaffold0127 (120-175)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (120-175)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (120-174)||(1913-1967)
[»] scaffold0067 (3 HSPs)
scaffold0067 (160-198)||(46708-46746)
scaffold0067 (160-188)||(55733-55761)
scaffold0067 (160-188)||(62119-62147)
[»] scaffold0002 (1 HSPs)
scaffold0002 (160-217)||(371400-371456)
[»] scaffold0335 (1 HSPs)
scaffold0335 (118-174)||(2628-2684)
[»] scaffold0005 (1 HSPs)
scaffold0005 (160-188)||(266108-266136)


Alignment Details
Target: scaffold0090 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 18062 - 18272
Alignment:
Q  13 tggacatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaaccct-aaccctcaatttattttccaaaaactatgca 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || ||| ||||||||||||||||||| ||| ||| |||    
T  18062 tggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagca 18161  T
Q  112 attaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||    
T  18162 attaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgattacacaacacaatcggttccta 18261  T
Q  212 ggctctcctct 222  Q
     || |||||||    
T  18262 agccctcctct 18272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 11238 - 11444
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatt-tattttccaaaaactatgcaat 113  Q
    |||||||||||||| |||||||||||||| || |||   |||||  ||||||| ||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  11238 acatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttcc-aaaactaagcaat 11335  T
Q  114 taggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctagg 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  11336 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacacagcaaaatcggttcctagg 11435  T
Q  214 ctctcctct 222  Q
    |||| ||||    
T  11436 ctcttctct 11444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 38144679 - 38144500
Alignment:
Q  32 agaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaa 130  Q
    ||||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  38144679 agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaat-tatgcaattaggtcaattttcagaa 38144581  T
Q  131 attatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  38144580 attatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgattacacagcacaatcggttccta 38144500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 19512298 - 19512441
Alignment:
Q  32 agaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaa 130  Q
    ||||||||||||| || ||||  ||||| ||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19512298 agaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaa 19512397  T
Q  131 attatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  19512398 attatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 28370200 - 28370055
Alignment:
Q  29 aacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttca 127  Q
    |||||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28370200 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattttca 28370102  T
Q  128 gaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28370101 gaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 22751053 - 22751201
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22751053 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcaga 22751151  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagtttt 179  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  22751152 aattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 23528670  T
Q  160 ctcacccttaccttagtttt 179  Q
    ||||||||||||||||||||    
T  23528671 ctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 22438803 - 22438723
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 198  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 22438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 42961566 - 42961669
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||| || |||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacagcacaatcggttcctaagccctc 42961665  T
Q  219 ctct 222  Q
    ||||    
T  42961666 ctct 42961669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 1856497 - 1856445
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  1856497 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 1856445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 21674467 - 21674415
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  21674467 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 21674415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  122 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  122 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 18800334 - 18800538
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatt-tattttccaaaaactatgcaat 113  Q
    |||||||||||||| |||||||||||||| || |||   |||||  ||||||| ||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  18800334 acatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttcc-aaaactaagcaat 18800431  T
Q  114 taggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctagg 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||    
T  18800432 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaaggattacacagcaaaatcggttcctagg 18800531  T
Q  214 ctctcct 220  Q
    |||||||    
T  18800532 ctctcct 18800538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 10986339 - 10986170
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  10986339 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaatt 10986241  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  10986240 aggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 29614291 - 29614124
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||| | |||| ||||||| ||||||||||||||||    
T  29614291 agaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcaga 29614192  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29614191 aattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 29614124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 4477754 - 4477912
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||| ||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||    
T  4477754 acattacattacaa-cagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaatt 4477852  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4477853 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 23839095 - 23839253
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| | |||||| ||||||| |||||||||||||||||| ||||||| |||||||||||    
T  23839095 acattacattacaa-cagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaatt 23839193  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23839194 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 23057850 - 23057993
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||     
T  23057850 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagg 23057948  T
Q  130 aattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  23057949 aattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 930215 - 930085
Alignment:
Q  55 ttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaaga 153  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  930215 ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctatacaattaggtcaattttcagaaactatagattatgattattgaga 930117  T
Q  154 gatagtctcacccttaccttagttttgcagaa 185  Q
    ||||||||||||||||||||||||||||||||    
T  930116 gatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 12168305 - 12168465
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 12168402  T
Q  160 ctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||||||||| ||||| ||||| |  |||| || ||||||||||||||    
T  12168403 ctcacccttaccttagttttgcagaa-aattagacagcaaggatcgatttctaggctctcctct 12168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 19785982 - 19785822
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  ||| |||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctattcaactaggtcaattt-cagaaattatagattatgattattgagagatagt 19785885  T
Q  160 ctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||||||||| ||||| ||||| |  |||| || ||||||||||||||    
T  19785884 ctcacccttaccttagttttgcagaa-aattagacagcaaggatcgatttctaggctctcctct 19785822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 19878398 - 19878558
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19878495  T
Q  160 ctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||||||||| ||||| ||||| |  |||| || ||||||||||||||    
T  19878496 ctcacccttaccttagttttgcagaa-aattagacagcaaggatcgatttctaggctctcctct 19878558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19287311  T
Q  160 ctcacccttaccttagttttgcagaa 185  Q
    ||||||||||||||||||||||||||    
T  19287312 ctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 19884174 - 19884334
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 19884271  T
Q  160 ctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    |||||||| ||||||||||||||||| ||||| ||||| |  |||| || ||||||||||||||    
T  19884272 ctcaccctaaccttagttttgcagaa-aattagacagcaaggatcgatttctaggctctcctct 19884334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34646743 ttattttccaaaat-tattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 24512899 - 24512796
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||| |||||||||  ||| ||||||| ||||| ||||||||||||     
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 24512800  T
Q  219 ctct 222  Q
    ||||    
T  24512799 ctct 24512796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 25469785 - 25469704
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  25469785 ttattttccaaaacc-attcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 31252406 - 31252478
Alignment:
Q  103 aactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||| ||||||| | ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||    
T  31252406 aactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  122 ttttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 21565367 - 21565214
Alignment:
Q  19 tcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattagg 117  Q
    ||||||||||| || ||||||||||| || ||||  ||||| | |||||| ||||||| |||||||||||||||| | | |  ||   || |||||||||    
T  21565367 tcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaattt-tatcctcaaggttaagcaattagg 21565270  T
Q  118 tcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 172  Q
    ||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  21565269 tcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 875 - 740
Alignment:
Q  51 ccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattatt 149  Q
    ||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  875 ccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattatt 776  T
Q  150 aagagatagtctcacccttaccttagttttgcagaa 185  Q
     |||||||||||||||||||||||||||||||||||    
T  775 gagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 14422881 - 14423043
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  14422881 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaatt 14422979  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14422980 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 18873272 - 18873420
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  18873272 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcaga 18873370  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagtttt 179  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  18873371 aattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 12709995 - 12709833
Alignment:
Q  23 attacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtca 120  Q
    |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  12709995 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtca 12709897  T
Q  121 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12709896 attt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 13123066 - 13122904
Alignment:
Q  23 attacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtca 120  Q
    |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13123066 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtca 13122968  T
Q  121 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13122967 attt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 15168087 - 15168230
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  15168087 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcaga 15168185  T
Q  130 aattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  15168186 aattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 10895934 - 10895795
Alignment:
Q  32 agaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaa 130  Q
    ||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||    
T  10895934 agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcaaaa 10895835  T
Q  131 attatagattatgattattaagagatagtctcacccttac 170  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10895834 attatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 16009474 - 16009631
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaaccct-aaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||| ||||| |||||||| |||||||| | ||||||||    
T  16009474 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaacc-atgcaatt 16009571  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16009572 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 13743623 - 13743774
Alignment:
Q  34 aattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaa 131  Q
    ||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  13743623 aattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-caggaa 13743720  T
Q  132 ttatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13743721 ttataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 16677250 - 16677348
Alignment:
Q  75 aaccctaaccctcaattt-attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16677250 aaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 17651486 - 17651584
Alignment:
Q  75 aaccctaaccctcaattt-attttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17651486 aaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 12590659  T
Q  160 ctcacccttaccttagttttgcagaa 185  Q
    ||||||||||||||||||||||||||    
T  12590658 ctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 13007471  T
Q  160 ctcacccttaccttagttttgcagaa 185  Q
    ||||||||||||||||||||||||||    
T  13007472 ctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 21231015 - 21230912
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||||||||||||     
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 21230916  T
Q  219 ctct 222  Q
    ||||    
T  21230915 ctct 21230912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 20311107 - 20311026
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag--ttttgcagaagaattacacagca 198  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||  ||||||||||  ||| |||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaaagattgcacagca 20311026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 14945123 - 14945066
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctct 217  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  14945123 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 14945066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 15372716 - 15372659
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctct 217  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  15372716 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 15372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 148619 - 148722
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||  ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||||||| |||||||  |||||| || |||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacaacacaatcagttcctaagccctc 148718  T
Q  219 ctct 222  Q
    ||||    
T  148719 ctct 148722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  111 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||| ||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  139 ttatgattattaagagatagtctcacccttaccttagttttg 180  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  139 ttatgattattaagagatagtctcacccttaccttagttttg 180  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  139 ttatgattattaagagatagtctcacccttaccttagttttg 180  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||| ||||||||| ||||| || ||| |||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 14555 - 14398
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaat 113  Q
    |||||||||||||| |||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  14555 acatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaat 14457  T
Q  114 taggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14456 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 24192852 - 24193009
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaat 113  Q
    |||||||||||||| |||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  24192852 acatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaat 24192950  T
Q  114 taggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24192951 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 23370664 - 23370505
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||    
T  23370664 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaatt 23370566  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  23370565 aggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 9534225 - 9534382
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||  |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  9534225 acattacattacaa-cagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaatt 9534322  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9534323 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 14762901 - 14762758
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  14762901 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcaga 14762803  T
Q  130 aattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  14762802 aattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 20247930 - 20247791
Alignment:
Q  34 aattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaa 131  Q
    ||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  20247930 aattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaa 20247832  T
Q  132 ttatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  20247831 ttatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 38310943 - 38310802
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  38310943 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaatattcaga 38310845  T
Q  130 aattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  38310844 aattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 16801576 - 16801444
Alignment:
Q  65 aatcgtcatcaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcac 164  Q
    |||| ||||||||||||||| |||||||  | | ||||| ||| ||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  16801576 aatcatcatcaaccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcac 16801478  T
Q  165 ccttaccttagttttgcagaagaattacacagca 198  Q
    |||||||||||||||||||||| |||||||||||    
T  16801477 ccttaccttagttttgcagaaggattacacagca 16801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  92 tattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 24933910 - 24933828
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24933910 ttattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  113 ttaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 24122273 - 24122221
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| ||||||    
T  24122273 tctcacccttaccttagttttgcagaaagattaaacagcacaatcggttccta 24122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 55499261 - 55499185
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatc-aaccctaaccctcaattt 92  Q
    |||||||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||| ||||||||||||||||||    
T  55499261 acatcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 13967814 - 13967762
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  || | |||||||||||| ||||||    
T  13967814 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 13967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 13973289 - 13973237
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  || | |||||||||||| ||||||    
T  13973289 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 13973237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 10389518 - 10389443
Alignment:
Q  100 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10389518 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 10414607 - 10414532
Alignment:
Q  100 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10414607 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 10421277 - 10421202
Alignment:
Q  100 aaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||| ||||||| | | ||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  10421277 aaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||||| |||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 18127733 - 18127695
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagca 198  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18127733 ctcacccttaccttagttttgcagaaaaaatacacagca 18127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 18135503 - 18135465
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagca 198  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18135503 ctcacccttaccttagttttgcagaaaaaatacacagca 18135465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18718311 - 18718254
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctct 217  Q
    ||||||||||||||||  ||||||||||| | ||||||| ||||| ||||| ||||||    
T  18718311 ctcacccttaccttagaattgcagaagaaatgcacagcaaaatcggttccttggctct 18718254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 14543506 - 14543478
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  14543506 ctcacccttaccttagttttgcagaagaa 14543478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 16829132 - 16829104
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  16829132 ctcacccttaccttagttttgcagaagaa 16829104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 16837654 - 16837626
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  16837654 ctcacccttaccttagttttgcagaagaa 16837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 11994 - 11802
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  11994 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaa-ctatgcaattaggtcaattttcaga 11896  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca-caatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| || |||  ||||| || ||||||||||||||    
T  11895 aattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaagattatactgcatgaatcggtttctaggctctcctct 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 111583 - 111741
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  111583 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaatt 111680  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  111681 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 30839 - 30960
Alignment:
Q  101 aaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  30839 aaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacacagcaaa 30938  T
Q  201 atcgtttcctaggctctcctct 222  Q
    |||| |||||||||||||||||    
T  30939 atcgattcctaggctctcctct 30960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 26583744 - 26583929
Alignment:
Q  36 ttaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaatta 134  Q
    ||||||||| || |||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  26583744 ttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagaaatta 26583841  T
Q  135 tagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |  |||| ||| |||||||||||||    
T  26583842 tagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagcaaggatcggttcttaggctctcctct 26583929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 6483627 - 6483772
Alignment:
Q  29 aacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttca 127  Q
    |||||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6483627 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattttca 6483725  T
Q  128 gaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6483726 gaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 6487094 - 6487239
Alignment:
Q  29 aacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttca 127  Q
    |||||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6487094 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattttca 6487192  T
Q  128 gaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6487193 gaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 19661611 - 19661454
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||    
T  19661611 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaatt 19661514  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  19661513 aggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 5706106 - 5706023
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  5706106 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 23265093 - 23265197
Alignment:
Q  71 catcaaccctaaccctcaatttat-tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcaccctta 169  Q
    ||||||||||||  |||||||| | ||| ||| ||| || ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  23265093 catcaaccctaattctcaatttttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcaccctta 23265192  T
Q  170 cctta 174  Q
    |||||    
T  23265193 cctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 23280161 - 23280265
Alignment:
Q  71 catcaaccctaaccctcaatttat-tttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcaccctta 169  Q
    ||||||||||||  |||||||| | ||| ||| ||| || ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  23280161 catcaaccctaattctcaatttttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcaccctta 23280260  T
Q  170 cctta 174  Q
    |||||    
T  23280261 cctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 21908311 - 21908414
Alignment:
Q  71 catcaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttac 170  Q
    |||||||||||| || ||||||  | ||||| ||| ||  | |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  21908311 catcaaccctaatccccaattttatatccaagaacaatatacttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttac 21908410  T
Q  171 ctta 174  Q
    ||||    
T  21908411 ctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 6260186 - 6260124
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcctct 222  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||| || |||||||    
T  6260186 ctcacccttaccttagttttgcagaatgattacacagcacaatcggttcctaagccctcctct 6260124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 23878905 - 23879060
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccat-ttcccgtcagaatcgtcatcaaccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||||||||||||| || ||||||||||| || ||||   ||||| |||||||| ||| |||||||||||||||||||| |   |||    || ||||||    
T  23878905 acatcacattacaa-cataattaacatgatcattaccccattcccctcagaatcatcaacaaccctaaccctcaatttaatcctcaaggt-taagcaatt 23879002  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||  ||||||||| || || |||| | ||||||||||||||||||||||    
T  23879003 aggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 23101618 - 23101463
Alignment:
Q  19 tcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattagg 117  Q
    ||||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||| | | |  ||   ||  ||||||||    
T  23101618 tcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt-tatcctcaaggttaaacaattagg 23101521  T
Q  118 tcaattttcagaaattatagattatg-attattaagagatagtctcacccttacctta 174  Q
    ||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||||    
T  23101520 tcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 26885139 - 26885246
Alignment:
Q  76 accctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||||  |||||||| || ||||| |||||| | ||||| | ||||||||||||||||| |||| ||||||| | ||||| || ||||||||||||||    
T  26885139 accctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T
Q  176 ttttgcaga 184  Q
      |||||||    
T  26885238 aattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 19665081 - 19665026
Alignment:
Q  167 ttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| || |||||||    
T  19665081 ttaccttagttttgcagaatgattacacagcacaatcggttcctaagccctcctct 19665026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 23089210 - 23089057
Alignment:
Q  19 tcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattagg 117  Q
    ||||||||||| || ||||||||||| || ||||  ||||| | |||||| ||||||| |||||||||||||||| | | |  ||   || |||||||||    
T  23089210 tcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaattt-tatcctcaaggttaagcaattagg 23089113  T
Q  118 tcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 172  Q
    ||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  23089112 tcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 20437182 - 20437024
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| || ||||||||||| || ||||  ||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20437182 acattacattacaa-cataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaatt 20437084  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20437083 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 41111977 - 41112137
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatagt 41112074  T
Q  160 ctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||||||||| ||||| ||||| |  |||| || ||||||||||||||    
T  41112075 ctcacccttaccttagttttgcagaa-aattagacagcaaggatcgatttctaggctctcctct 41112137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 111793 - 111960
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaatttt-cag 128  Q
    ||||||||||||| || |||| ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||    
T  111793 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaatttttcag 111891  T
Q  129 aaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 198  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  111892 aaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 111960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 10354 - 10195
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||    
T  10354 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaatt 10256  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10255 aggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 1684 - 1525
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||    
T  1684 acattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaatt 1586  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1585 aggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 44477532 - 44477678
Alignment:
Q  29 aacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttca 127  Q
    |||||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44477532 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattttca 44477630  T
Q  128 gaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44477631 gaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 44492690 - 44492836
Alignment:
Q  29 aacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttca 127  Q
    |||||||||||||||| || ||||  ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44492690 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattttca 44492788  T
Q  128 gaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44492789 gaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 23866518 - 23866680
Alignment:
Q  23 attacaaacagaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtca 120  Q
    |||||||| ||||||||||||| || |||| ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  23866518 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtca 23866616  T
Q  121 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23866617 attt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 8727891 - 8727735
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||| ||||||||| |||||||||||||| || ||||  | ||| |||||||| || |||| |||||||||||||||||| |||||||||||||||||||    
T  8727891 acattacattacaa-cagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaatt 8727793  T
Q  115 aggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  8727792 aggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 17054630  T
Q  160 ctcacccttaccttagttttgcagaa 185  Q
    |||||||||||||| |||||||||||    
T  17054631 ctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 14056619 - 14056516
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||||||||  ||| |||| || ||||| ||||||||||||     
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaaagattgcacaacaaaatcggttcctaggctctt 14056520  T
Q  219 ctct 222  Q
    ||||    
T  14056519 ctct 14056516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 27940907 - 27940804
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||| || |||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacagcacaatcggttcctaagccctc 27940808  T
Q  219 ctct 222  Q
    ||||    
T  27940807 ctct 27940804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 25111976 - 25112079
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||| ||||  ||| |||| || ||||| || |||||||||     
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaaagattgcacaacaaaatcggtttctaggctctt 25112075  T
Q  219 ctct 222  Q
    ||||    
T  25112076 ctct 25112079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||| | |||||||||||| | ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 30765925 - 30765873
Alignment:
Q  159 tctcacccttaccttagttttgcagaagaattacacagcacaatcgtttccta 211  Q
    |||||||||||||||||||||||||||  || | |||||||||||| ||||||    
T  30765925 tctcacccttaccttagttttgcagaaagataaaacagcacaatcggttccta 30765873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 21321192 - 21321125
Alignment:
Q  151 agagatagtctcacccttaccttagttttgcag-aagaattacacagcacaatcgtttcctaggctct 217  Q
    |||| ||||||| |||||||||||| ||||||| ||||||| ||||||| ||||| ||||| ||||||    
T  21321192 agagttagtctcgcccttaccttagatttgcagaaagaattgcacagcaaaatcggttccttggctct 21321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 21325790 - 21325723
Alignment:
Q  151 agagatagtctcacccttaccttagttttgcag-aagaattacacagcacaatcgtttcctaggctct 217  Q
    |||| ||| |||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||| ||||||    
T  21325790 agagttagcctcacccttaccttagatttgcagaaagaattgcacagcaaaatcggttccttggctct 21325723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 206 - 368
Alignment:
Q  34 aattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaat 132  Q
    ||||||||||| || ||||  ||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  206 aattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagaaat 303  T
Q  133 tatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 198  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  304 tatagattatggttattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 1090 - 1240
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||     
T  1090 agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagg 1187  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagttttgca 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1188 aattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 50091 - 50241
Alignment:
Q  32 agaattaacatgaccagtacc-atttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcaga 129  Q
    ||||||||||||| || |||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||     
T  50091 agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagg 50188  T
Q  130 aattatagattatgattattaagagatagtctcacccttaccttagttttgca 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50189 aattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 8045955 - 8045822
Alignment:
Q  51 ccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattatt 149  Q
    ||||||||| |||||||  || |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||     
T  8045955 ccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaa-ctatgcaattaggtcaattt-cagaaattatagattatgattatc 8045858  T
Q  150 aagagatagtctcacccttaccttagttttgcagaa 185  Q
     |||||||||||||||||||||||||||||||||||    
T  8045857 gagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 11848049 - 11848215
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttcca-----aaaactatgcaattaggtcaattttcagaaattatagattatgattattaagag 154  Q
    |||||||||||||||| ||||||||||||||| |||||        |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||    
T  11848049 tcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagag 11848148  T
Q  155 atagtctcacccttaccttagttttgcagaagaattacacagc-acaatcgtttcctaggctctcctct 222  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| | ||||| || ||||||||||||||    
T  11848149 atagtctcacccttaccttagttttgcagaa-aattagacagcaagaatcggtt-ctaggctctcctct 11848215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 53483677 - 53483760
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  53483677 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 15408139 - 15408242
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| | |||||||  ||| ||||| | ||||| ||||||||||||     
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaaagattgcacagaaaaatcggttcctaggctctt 15408238  T
Q  219 ctct 222  Q
    ||||    
T  15408239 ctct 15408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttacct 172  Q
    ||||||||||||||||| |||||||| ||| |  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcaccctta 169  Q
    |||||||||||||||| || | ||| |||||| |||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 1650219 - 1650182
Alignment:
Q  160 ctcacccttaccttagttttgcag-aagaattacacag 196  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1650219 ctcacccttaccttagttttgcagaaagaattacacag 1650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  139 ttatgattattaagagatagtctcacccttaccttagttttg 180  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 43284059 - 43284002
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctct 217  Q
    |||||||||||||||| |||||||||  ||| ||||||  ||||| ||||||||||||    
T  43284059 ctcacccttaccttagatttgcagaaagattgcacagcgaaatcggttcctaggctct 43284002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 1997 - 1887
Alignment:
Q  75 aaccctaaccctcaatttattttccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttacctt 173  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  1997 aaccctaaccctcaaattattttccaaaa-ctatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttacctt 1899  T
Q  174 agttttgcagaa 185  Q
    ||||||||||||    
T  1898 agttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 8674 - 8564
Alignment:
Q  75 aaccctaaccctcaatttattttccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttacctt 173  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  8674 aaccctaaccctcaaattattttccaaaa-ctatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttacctt 8576  T
Q  174 agttttgcagaa 185  Q
    ||||||||||||    
T  8575 agttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 916 - 991
Alignment:
Q  104 actatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 179  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  916 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 8061 - 8136
Alignment:
Q  104 actatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 179  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8061 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 1748  T
Q  160 ctcacccttaccttagttttg 180  Q
    |||||||||||||||||||||    
T  1747 ctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  61 tcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagt 159  Q
    |||||||| ||||||| |||||||  |||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctattcaattaggtcaattt-caggaattatagattatgattattgagagatagt 5771  T
Q  160 ctcacccttaccttagttttg 180  Q
    |||||||||||||||||||||    
T  5770 ctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 40587 - 40484
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||||||||||||     
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 40488  T
Q  219 ctct 222  Q
    ||||    
T  40487 ctct 40484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 45357 - 45268
Alignment:
Q  91 ttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgc 181  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  45357 ttatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 22646 - 22545
Alignment:
Q  121 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcct 220  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||||||| | |||||||||  ||| ||||||| ||||| |||||||||||| ||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaaatattgcacagcaaaatcggttcctaggctcttct 22547  T
Q  221 ct 222  Q
    ||    
T  22546 ct 22545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 135473 - 135576
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctc 218  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| |||||  ||| ||||||| ||||| ||| ||||||||     
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaaagattgcacagcaaaatcggttcttaggctctt 135572  T
Q  219 ctct 222  Q
    ||||    
T  135573 ctct 135576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 17643 - 17723
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 198  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 17723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  110 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 3452 - 3295
Alignment:
Q  16 acatcacattacaaacagaattaacatgac-cagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaat 113  Q
    |||||||||||||| || |||||||||||  || ||||  ||||| |||||||| ||||||| |||||||||||||||| | | || ||   || |||||    
T  3452 acatcacattacaa-caaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt-tatccccaaggttaagcaat 3355  T
Q  114 taggtcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 172  Q
    ||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3354 taggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  123 tttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 185  Q
    |||||||||||||| |||| ||| ||| |||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 3780 - 3624
Alignment:
Q  16 acatcacattacaaacagaattaacatgaccagtaccatttcccgtcagaatcgtcatcaa-ccctaaccctcaatttattttccaaaaactatgcaatt 114  Q
    |||||||||||||| || ||||||||||| || ||||  | ||| |||||||| ||||||| |||||||||||||||| | | |  ||   || ||||||    
T  3780 acatcacattacaa-cataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaattt-tatcctcaaggttaagcaatt 3683  T
Q  115 aggtcaattttcagaaattatagattatg-attattaagagatagtctcacccttacct 172  Q
    |||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3682 aggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 680 - 780
Alignment:
Q  85 ctcaatttattttccaaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcag 183  Q
    |||||||||||||| || |||||| |  |||||| |||||| ||||||||||| |||| ||| ||| | ||||| || ||||||||||||||||||||||    
T  680 ctcaatttattttc-aagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcag 778  T
Q  184 aa 185  Q
    ||    
T  779 aa 780  T

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Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

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Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  111 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0249 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 2256 - 2201
Alignment:
Q  167 ttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| || |||||||    
T  2256 ttaccttagttttgcagaatgattacacagcacaatcggttcctaagccctcctct 2201  T

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Target: scaffold0249; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 13970 - 13894
Alignment:
Q  100 aaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||| ||||||| | |||||| ||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  13970 aaaaactattcaattagattaatttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  119 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

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Target: scaffold0139; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 26892 - 26930
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagca 198  Q
    |||||||||||||||||||||||||| || |||||||||    
T  26892 ctcacccttaccttagttttgcagaaaaaatacacagca 26930  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 493105 - 493019
Alignment:
Q  97 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcaga 184  Q
    ||||| |||||| | ||||| | ||||||||||||||||| |||| ||||||| | ||||| |||||||||||||||||  |||||||    
T  493105 tccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

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Target: scaffold0261 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 23624 - 23525
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcc 219  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||  |||||||  |||  ||||||| ||  |||||||||| |||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcaga--aatagcacagcaaaacggtttcctaggttctcc 23527  T

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Target: scaffold0790 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 5487 - 5519
Alignment:
Q  153 agatagtctcacccttaccttagttttgcagaa 185  Q
    |||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaa 5519  T

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Target: scaffold0609 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 5929 - 5857
Alignment:
Q  103 aactatgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    |||||| ||||||| | ||||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  5929 aactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 178  Q
    ||||||||| ||||||||| |||||||| ||| |||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

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Target: scaffold0348 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

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Target: scaffold0348; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 14668 - 14606
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctctcctct 222  Q
    |||||||||||||||| |||||||||  ||| ||||||| ||||| ||| |||||||| ||||    
T  14668 ctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcataggctcttctct 14606  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 175  Q
    ||||||||||||||||| ||||||| |||| | ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  120 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||||||| ||||||| |||| | ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 46746 - 46708
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagca 198  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  46746 ctcacccttaccttagttttgcagaagaaatgcacagca 46708  T

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Target: scaffold0067; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 55761 - 55733
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  55761 ctcacccttaccttagttttgcagaagaa 55733  T

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Target: scaffold0067; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 62147 - 62119
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  62147 ctcacccttaccttagttttgcagaagaa 62119  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 371400 - 371456
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttcctaggctct 217  Q
    |||||||||||||||||||||||||| || | ||||||| ||||| ||||| ||||||    
T  371400 ctcacccttaccttagttttgcagaaaaaatgcacagca-aatcggttccttggctct 371456  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  118 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 174  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 266108 - 266136
Alignment:
Q  160 ctcacccttaccttagttttgcagaagaa 188  Q
    |||||||||||||||||||||||||||||    
T  266108 ctcacccttaccttagttttgcagaagaa 266136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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