View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_4 (Length: 734)

Name: NF9288A_low_4
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_4
NF9288A_low_4
[»] chr8 (6 HSPs)
chr8 (271-734)||(4049663-4050127)
chr8 (7-273)||(4049357-4049623)
chr8 (334-376)||(39866737-39866779)
chr8 (345-455)||(11569379-11569491)
chr8 (224-267)||(36172434-36172477)
chr8 (382-439)||(24326106-24326163)
[»] chr6 (1 HSPs)
chr6 (335-377)||(9027604-9027646)
[»] chr3 (2 HSPs)
chr3 (382-452)||(22667478-22667548)
chr3 (382-452)||(22724117-22724187)
[»] chr7 (5 HSPs)
chr7 (334-375)||(4966181-4966222)
chr7 (348-422)||(33894666-33894742)
chr7 (397-444)||(8094396-8094443)
chr7 (382-445)||(30496780-30496843)
chr7 (337-370)||(27378837-27378870)
[»] chr2 (4 HSPs)
chr2 (337-422)||(38078365-38078452)
chr2 (334-377)||(1160673-1160716)
chr2 (339-377)||(11063518-11063556)
chr2 (337-439)||(35329756-35329860)
[»] chr1 (4 HSPs)
chr1 (337-422)||(6279427-6279514)
chr1 (358-444)||(32515374-32515462)
chr1 (339-377)||(28689454-28689492)
chr1 (334-418)||(38170649-38170735)
[»] chr4 (1 HSPs)
chr4 (337-376)||(8468976-8469015)
[»] chr5 (1 HSPs)
chr5 (337-375)||(8177536-8177574)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 271 - 734
Target Start/End: Original strand, 4049663 - 4050127
Alignment:
Q  271 aagaggttgacatagtgagaagaagctattatgtagagtttatgaaaataagctattctgaggtgaagagcttatgaaaataaactcaaaacaacttatg 370  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049663 aagaggttgacatagttagaagaagctattatgtagagtttatgaaaataagctattctgaggtgaagagcttatgaaaataaactcaaaacaacttatg 4049762  T
Q  371 gacatgtatatctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaataggccaatcaaagaacaggtgcaaact 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  4049763 gacatgtatatctgtttccataagcactctcaagtagtctcacaagtgcttatgatactagataagctcgaataggccaatcaaagaacaggtgcaaact 4049862  T
Q  471 taaaatgaatttgagaatgaaatttgtcaaacacaatatactagatcaaaaatagggattcacactcttaaaagaaatatttggaaaatcagttctatac 570  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  4049863 taaaatgaatttgaaaatgaaatttgtcaaacacaatatactagatcaaaaatagtgattcacactctt-aaagaaatatttggaaaatcagttctatac 4049961  T
Q  571 cttatcctgctctagcttcttgaggatatcactcctagctctttgttcttcttctttttctgcttttctcaaggataaattcctgataatagggcattca 670  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049962 cttatcctgctctagcttcttgaggatgtcactcctagctctttgttcttcttctttttctgcttttctcaaggataaattcctgataatagggcattca 4050061  T
Q  671 tgagtaatttccttac--nnnnnnntaacagaaaagaagcaactagtaatcatcgagataccgttt 734  Q
    ||| ||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  4050062 tgaataatttccttacaaaaaaaaataacagaaaagaagcaactagtaatcatcgagataccgttt 4050127  T

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Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 4049357 - 4049623
Alignment:
Q  7 aaacattctcttaagtgctcaacttttgtgcttgtataaacaggctttgaaatctgcaagttccattgaaatgtcgatttagataacacaatctcaatag 106  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049357 aaacattctcttaagtgctcaacttttgtggttgtataaacaggctttgaaatctgcaagttccattgaaatgtcgatttagataacacaatctcaatag 4049456  T
Q  107 gaaactgaaaacaagattgaatatcagattgagaatccaatataaaatgaaaacagatgttgttcataccttttcttgctttatcgcaatggctggtgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4049457 gaaactgaaaacaagattgaatatcagattgagaatccaatataaaatgaaaacagatgttgttcataccttttcttgctttatcacaatggctggtgat 4049556  T
Q  207 ctcacatttgcttgactttctaaaggtaatccaagtatagaccttctatttaactgtaaaggcaaag 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049557 ctcacatttgcttgactttctaaaggtaatccaagtatagaccttctatttaactgtaaaggcaaag 4049623  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 39866779 - 39866737
Alignment:
Q  334 tgaagagcttatgaaaataaactcaaaacaacttatggacatg 376  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  39866779 tgaagagcttatgaaaataaactgaaaacagcttatggacatg 39866737  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 11569491 - 11569379
Alignment:
Q  345 tgaaaataaactcaaaacaacttatggacatgt-atat-ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaa 442  Q
    ||||||||| || ||||||||||||| |||||| |||  |||||||||||||| |||| ||  ||||||||||||| ||| |  || ||||||||||  |    
T  11569491 tgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgccagcagataagctctga 11569392  T
Q  443 taggccaatcaaa 455  Q
    || ||||||||||    
T  11569391 taagccaatcaaa 11569379  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 36172434 - 36172477
Alignment:
Q  224 ttctaaaggtaatccaagtatagaccttctatttaactgtaaag 267  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||    
T  36172434 ttctaaaggcaatccaagtttagaccttctatttaactataaag 36172477  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 24326106 - 24326163
Alignment:
Q  382 ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctc 439  Q
    |||||||||||||| ||| |||  ||||||||||||||||| |  |||||||||||||    
T  24326106 ctgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctc 24326163  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 9027604 - 9027646
Alignment:
Q  335 gaagagcttatgaaaataaactcaaaacaacttatggacatgt 377  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  9027604 gaagagcttatgaaaataagctgaaaacaacttatggacatgt 9027646  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 22667478 - 22667548
Alignment:
Q  382 ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaataggccaatc 452  Q
    |||||||||||| | |||||||  ||||||||||||||||| |  ||||||||||||| |||| |||||||    
T  22667478 ctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22667548  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 22724117 - 22724187
Alignment:
Q  382 ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaataggccaatc 452  Q
    |||||||||||| | |||||||  ||||||||||||||||| |  ||||||||||||| |||| |||||||    
T  22724117 ctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22724187  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 4966181 - 4966222
Alignment:
Q  334 tgaagagcttatgaaaataaactcaaaacaacttatggacat 375  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  4966181 tgaagagcttatggaaataaactgaaaacaacttatggacat 4966222  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 33894666 - 33894742
Alignment:
Q  348 aaataaactcaaaacaacttatggacatgt-atat-ctgtttccataagcactctcaagtagtctcacaagtgctta 422  Q
    |||||| || |||||||||||||||||||| |||| |||||| ||||||| ||| |||  |||||||||||||||||    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgctta 33894742  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 8094396 - 8094443
Alignment:
Q  397 ctctcaagtagtctcacaagtgcttacgatagtagataagctcgaata 444  Q
    ||||||| |||||||||||||||||| | |||||||||||||| ||||    
T  8094396 ctctcaaatagtctcacaagtgcttatgctagtagataagctcaaata 8094443  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 30496780 - 30496843
Alignment:
Q  382 ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaatag 445  Q
    |||||| ||||||| ||||||||||||||| |||| ||||| | |||||||||| ||| |||||    
T  30496780 ctgttttcataagctctctcaagtagtctcgcaagggcttatgctagtagataaactcaaatag 30496843  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 370
Target Start/End: Complemental strand, 27378870 - 27378837
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatg 370  Q
    |||||||||||||||||||| |||||||||||||    
T  27378870 agagcttatgaaaataaactgaaaacaacttatg 27378837  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 38078452 - 38078365
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatggacatg--tatatctgtttccataagcactctcaagtagtctcacaagtgctta 422  Q
    |||||||||| |||| | |||||||||||||||| |||||  | || || ||||||||||| ||||||  ||||||||| ||||||||    
T  38078452 agagcttatgtaaatgagctcaaaacaacttatgaacatgcctttaactatttccataagctctctcagatagtctcaccagtgctta 38078365  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 1160716 - 1160673
Alignment:
Q  334 tgaagagcttatgaaaataaactcaaaacaacttatggacatgt 377  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||    
T  1160716 tgaacagcttatggaaataaactaaaaacaacttatggacatgt 1160673  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 11063518 - 11063556
Alignment:
Q  339 agcttatgaaaataaactcaaaacaacttatggacatgt 377  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  11063518 agcttatgaaaataagctaaaaacaacttatggacatgt 11063556  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 439
Target Start/End: Complemental strand, 35329860 - 35329756
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatggacatgta--tatctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagata 434  Q
    |||||||||| |||||| ||  |||||||||| || |||||   || |||||||||||||  ||| |||||| |||||| |||| ||| | |||||||||    
T  35329860 agagcttatggaaataagctggaaacaacttaggggcatgtcattaactgtttccataagatctcacaagtaatctcactagtgtttatggtagtagata 35329761  T
Q  435 agctc 439  Q
    |||||    
T  35329760 agctc 35329756  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 6279427 - 6279514
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatggacatgt--atatctgtttccataagcactctcaagtagtctcacaagtgctta 422  Q
    |||||||||| |||||  || ||||||||||||||||||||   || |||||||||||||| |||||||  || | ||||||||||||    
T  6279427 agagcttatggaaatacgctgaaaacaacttatggacatgtggttaactgtttccataagctctctcaaacagccacacaagtgctta 6279514  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 444
Target Start/End: Complemental strand, 32515462 - 32515374
Alignment:
Q  358 aaaacaacttatggacatgt-atat-ctgtttccataagcactctcaagtagtctcacaagtgcttacgatagtagataagctcgaata 444  Q
    |||||||||||| ||||||| |||  |||||||||||||| ||| |||  ||||||||||||||||| | |||||||||| ||| ||||    
T  32515462 aaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 28689492 - 28689454
Alignment:
Q  339 agcttatgaaaataaactcaaaacaacttatggacatgt 377  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28689492 agcttatgaaaataagctgaaaacaacttatggacatgt 28689454  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 418
Target Start/End: Complemental strand, 38170735 - 38170649
Alignment:
Q  334 tgaagagcttatgaaaataaactcaaaacaacttatggacatgt-at-atctgtttccataagcactctcaagtagtctcacaagtg 418  Q
    ||||||||||| ||||| || || ||||||||||||| |||||| || | |||||| ||||||| ||| |||| |||||||||||||    
T  38170735 tgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtg 38170649  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 8468976 - 8469015
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatggacatg 376  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  8468976 agagcttatgaaaataatctgaaaacaacttatggacatg 8469015  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 8177574 - 8177536
Alignment:
Q  337 agagcttatgaaaataaactcaaaacaacttatggacat 375  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  8177574 agagcttatgaaaataacctgaaaacaacttatggacat 8177536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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