View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_404 (Length: 242)

Name: NF9288A_low_404
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_404
NF9288A_low_404
[»] chr7 (20 HSPs)
chr7 (5-230)||(2455202-2455427)
chr7 (36-214)||(2505716-2505897)
chr7 (45-216)||(10414331-10414504)
chr7 (105-216)||(8038890-8039004)
chr7 (91-219)||(2506908-2507039)
chr7 (93-214)||(5046936-5047057)
chr7 (122-216)||(10991093-10991190)
chr7 (92-209)||(21502732-21502852)
chr7 (36-210)||(17887773-17887949)
chr7 (96-214)||(20175967-20176087)
chr7 (32-211)||(21228336-21228518)
chr7 (102-216)||(24751309-24751423)
chr7 (92-159)||(8317540-8317607)
chr7 (43-230)||(13281778-13281967)
chr7 (96-205)||(5236969-5237081)
chr7 (167-214)||(1732544-1732591)
chr7 (96-214)||(10332277-10332398)
chr7 (167-216)||(1254872-1254921)
chr7 (92-169)||(3585621-3585698)
chr7 (173-209)||(5471913-5471949)
[»] chr5 (11 HSPs)
chr5 (36-214)||(28280155-28280336)
chr5 (68-162)||(20532597-20532691)
chr5 (135-220)||(17336468-17336555)
chr5 (37-135)||(21089451-21089550)
chr5 (37-217)||(32415874-32416057)
chr5 (167-210)||(15520852-15520895)
chr5 (92-214)||(18832095-18832220)
chr5 (92-205)||(19003864-19003980)
chr5 (96-214)||(28254764-28254885)
chr5 (171-214)||(31600256-31600299)
chr5 (167-211)||(24807369-24807413)
[»] chr4 (21 HSPs)
chr4 (37-230)||(20316216-20316410)
chr4 (36-216)||(19547091-19547277)
chr4 (91-216)||(25117964-25118093)
chr4 (37-210)||(22217039-22217213)
chr4 (102-214)||(7613609-7613723)
chr4 (37-189)||(11240995-11241150)
chr4 (38-214)||(17661823-17662006)
chr4 (90-216)||(10108118-10108247)
chr4 (92-205)||(11252228-11252343)
chr4 (101-214)||(1832162-1832277)
chr4 (102-217)||(19335320-19335437)
chr4 (111-230)||(10089536-10089656)
chr4 (92-205)||(17711188-17711304)
chr4 (98-131)||(19538989-19539022)
chr4 (57-214)||(20828204-20828363)
chr4 (112-214)||(22345951-22346054)
chr4 (96-131)||(19667052-19667087)
chr4 (116-211)||(9849833-9849928)
chr4 (101-209)||(14573327-14573438)
chr4 (92-141)||(17024789-17024839)
chr4 (92-133)||(23970762-23970805)
[»] chr1 (14 HSPs)
chr1 (38-212)||(27911940-27912115)
chr1 (90-216)||(26581444-26581573)
chr1 (102-220)||(17016942-17017062)
chr1 (36-205)||(20033161-20033332)
chr1 (92-205)||(15542407-15542523)
chr1 (96-214)||(14235387-14235508)
chr1 (106-214)||(12262211-12262321)
chr1 (96-206)||(27116326-27116438)
chr1 (91-141)||(21448755-21448806)
chr1 (36-142)||(21536949-21537056)
chr1 (167-210)||(31260803-31260846)
chr1 (92-205)||(26022277-26022393)
chr1 (92-165)||(15631022-15631095)
chr1 (118-205)||(22507501-22507589)
[»] chr3 (16 HSPs)
chr3 (102-214)||(3002930-3003043)
chr3 (45-216)||(26092775-26092950)
chr3 (36-142)||(4838860-4838963)
chr3 (36-142)||(25530774-25530881)
chr3 (92-209)||(31284002-31284123)
chr3 (102-211)||(18466807-18466917)
chr3 (102-205)||(27073834-27073940)
chr3 (36-141)||(51118524-51118631)
chr3 (67-201)||(14977692-14977828)
chr3 (92-204)||(8765557-8765672)
chr3 (167-214)||(7208395-7208442)
chr3 (92-164)||(13906682-13906754)
chr3 (102-204)||(16242302-16242405)
chr3 (167-214)||(20886742-20886789)
chr3 (92-205)||(8145130-8145246)
chr3 (92-141)||(18747754-18747804)
[»] chr2 (17 HSPs)
chr2 (117-216)||(27871156-27871257)
chr2 (97-216)||(34369198-34369320)
chr2 (38-214)||(25938402-25938584)
chr2 (92-214)||(32141490-32141615)
chr2 (92-205)||(25537438-25537554)
chr2 (92-205)||(27907621-27907737)
chr2 (90-216)||(30682300-30682428)
chr2 (102-216)||(32438790-32438906)
chr2 (167-214)||(8445650-8445697)
chr2 (92-214)||(29717457-29717579)
chr2 (92-164)||(25886290-25886362)
chr2 (92-211)||(28930150-28930272)
chr2 (36-130)||(42153593-42153688)
chr2 (92-159)||(18758232-18758299)
chr2 (92-205)||(17350860-17350976)
chr2 (92-205)||(25196493-25196609)
chr2 (92-214)||(27420945-27421069)
[»] chr6 (18 HSPs)
chr6 (37-142)||(34395402-34395507)
chr6 (90-216)||(21546866-21546993)
chr6 (92-214)||(30356136-30356261)
chr6 (98-204)||(32759852-32759961)
chr6 (92-207)||(22564648-22564766)
chr6 (49-206)||(27961095-27961254)
chr6 (91-214)||(10822110-10822235)
chr6 (97-214)||(21079825-21079944)
chr6 (90-142)||(9387505-9387558)
chr6 (94-205)||(14723567-14723680)
chr6 (92-205)||(23005345-23005461)
chr6 (92-205)||(23782905-23783021)
chr6 (92-214)||(9507369-9507494)
chr6 (167-213)||(20404187-20404233)
chr6 (98-211)||(8038155-8038271)
chr6 (96-214)||(9339081-9339201)
chr6 (92-205)||(18171352-18171467)
chr6 (92-203)||(11136800-11136916)
[»] chr8 (14 HSPs)
chr8 (92-209)||(28904066-28904186)
chr8 (102-216)||(17649673-17649789)
chr8 (92-214)||(35861561-35861685)
chr8 (99-205)||(30832821-30832930)
chr8 (92-205)||(15176531-15176646)
chr8 (99-209)||(24851050-24851163)
chr8 (98-136)||(17976184-17976222)
chr8 (91-136)||(15557341-15557388)
chr8 (93-209)||(24381426-24381545)
chr8 (92-205)||(24090977-24091092)
chr8 (96-214)||(17980666-17980787)
chr8 (96-210)||(19784883-19785000)
chr8 (92-141)||(17510854-17510902)
chr8 (90-133)||(18836748-18836792)
[»] scaffold0072 (1 HSPs)
scaffold0072 (98-214)||(38164-38283)
[»] scaffold0085 (1 HSPs)
scaffold0085 (101-217)||(23872-23991)
[»] scaffold0086 (2 HSPs)
scaffold0086 (92-214)||(11966-12090)
scaffold0086 (96-209)||(12896-13012)
[»] scaffold0059 (1 HSPs)
scaffold0059 (36-141)||(63991-64097)
[»] scaffold0005 (1 HSPs)
scaffold0005 (101-209)||(243938-244049)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 2455427 - 2455202
Alignment:
Q  5 gtcttatgttactcttagcannnnnnncaaacatttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt 104  Q
    |||||| |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  2455427 gtcttacgttactcttagcatttttttcaaacatttttatttagttttaatccaaaataaatgagtattataacaatttcccatagtttttgggacattt 2455328  T
Q  105 gtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtgtttgatgtaatttaagaagaaatcacgcaaatcggcaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2455327 gtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtgtttgatgtaatttaagaagaaatcacgcaaatcggcaa 2455228  T
Q  205 agcaaaacattttaaatatttgtgaa 230  Q
    ||||||||||| ||||||||||||||    
T  2455227 agcaaaacattctaaatatttgtgaa 2455202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 2505897 - 2505716
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattc 134  Q
    ||||||||||||||||  |||||||||| | |||| ||| |||||||  |  | |||||||| |||||| | |||||||||| || ||||||||||||||    
T  2505897 catttttatttagtttcgatccaaaatagaggagttttagaacaattgtctatggttttcggaacattttgcaatgttttcttttcgagtcatgtaattc 2505798  T
Q  135 tagtttttcgcgaaacaaagcaattcta--ggtgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    ||||||| | ||||||| ||||||| ||  ||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||    
T  2505797 tagttttcc-cgaaacatagcaattttaagggtgttttgatgtaattcaagaagaaatcatgcaaatcgtcaaagaaaaacat 2505716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 10414331 - 10414504
Alignment:
Q  45 ttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttc 143  Q
    |||||||| ||| | |||||| |||||||| || || ||||  ||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||| |    
T  10414331 ttagttttcatcaagaataaaggagtattagaagaaattcctatagttttcgggacatttgtaatg-tttctatgttgagtcgtgtaattatagttttcc 10414429  T
Q  144 gcgaaacaaagcaattctag-gtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattt 216  Q
       ||| | ||||||||||| ||| |||||| ||||| |||||||||||| |||||||| |||| ||||||||||    
T  10414430 taaaaaaatagcaattctagagtgttttgatataattcaagaagaaatcatgcaaatcgacaaaacaaaacattt 10414504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 8039004 - 8038890
Alignment:
Q  105 gtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatcgg 201  Q
    |||||||||||||| |||| ||||||||||||||||||||  |||||| |||||||||| |||| |||||||||||| || |||||||||  |||||||     
T  8039004 gtaatgttttctatattgattcatgtaattctagtttttcctgaaacatagcaattctagggtgttttgatgtaattcaaaaagaaatcatccaaatcga 8038905  T
Q  202 caaagcaaaacattt 216  Q
    |||| ||||||||||    
T  8038904 caaaacaaaacattt 8038890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 2506908 - 2507039
Alignment:
Q  91 ttttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaaga 186  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||| || ||| | ||||| || |||| || |||| |||||| ||||| | |||||    
T  2506908 ttttcgagacatttgtaatgttttctatatttgagtcatgtaattcta-ttattcccaaaacatagaaattttagggtgttttgatctaattcacgaaga 2507006  T
Q  187 aatcacgcaaatcggcaaagcaaaacattttaa 219  Q
    ||||| ||||||| ||||||||| |||| ||||    
T  2507007 aatcatgcaaatcagcaaagcaagacatcttaa 2507039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 5046936 - 5047057
Alignment:
Q  93 ttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag-gtgttt-gatgtaatttaagaagaaa 188  Q
    ||||||||||||||||||||||||||  |||||| ||||||||    || ||| ||||||| ||||||| ||| |||||| ||||||||| | |||||||    
T  5046936 ttcgggacatttgtaatgttttctatatttgagttatgtaatt----ttcttcccgaaacatagcaattttagagtgttttgatgtaattcacgaagaaa 5047031  T
Q  189 tcacgcaaatcggcaaagcaaaacat 214  Q
    ||| ||||||||||||| ||| ||||    
T  5047032 tcatgcaaatcggcaaatcaagacat 5047057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 10991093 - 10991190
Alignment:
Q  122 agtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatc-acgcaaatcggcaaagcaaaacattt 216  Q
    |||||||||||||||||||||| | ||| | |  ||||||||| ||||| |||||||||||||||||||||   ||||||||||||||||||||||||    
T  10991093 agtcatgtaattctagtttttcccaaaagatataaattctagggtgttttgatgtaatttaagaagaaatctttgcaaatcggcaaagcaaaacattt 10991190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 21502852 - 21502732
Alignment:
Q  92 tttcgggacatttgtaatgttttct--atttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaaga 186  Q
    |||||||||||||||||||||||||  | ||||||| |||||||||| || ||| ||||||| |||||||||||   || ||||| |||||| | |||||    
T  21502852 tttcgggacatttgtaatgttttctagacttgagtc-tgtaattcta-ttcttcccgaaacatagcaattctagggtgtttttgaggtaattcacgaaga 21502755  T
Q  187 aatcacgcaaatcggcaaagcaa 209  Q
    ||||| |||||||| ||||||||    
T  21502754 aatcatgcaaatcgacaaagcaa 21502732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 17887773 - 17887949
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattc 134  Q
    |||||||| |||||||| |||||| ||| | |||| ||| |  |||| ||  | ||||| ||||||||| |||||||||||  ||||||||||||||||     
T  17887773 catttttagttagttttgatccaagatagaggagttttagagaaattgcctatggttttagggacattttgtaatgttttcattttgagtcatgtaattg 17887872  T
Q  135 tagtttttcgcgaaacaaagcaattcta-ggtgttt--gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaa 210  Q
    || ||||||   |||  ||||||||||| |||||||  ||||||||| ||||||||| || ||||||||| ||||||||    
T  17887873 tactttttca--aaatcaagcaattctatggtgtttttgatgtaattcaagaagaaaacatgcaaatcggaaaagcaaa 17887949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 20176087 - 20175967
Alignment:
Q  96 gggacatttgtaatgttt-tctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcac 192  Q
    |||||||||||||| ||| | ||||| | ||||||||||||| |||| | ||||||| |||||||||||| ||||| ||||||||| | ||||||||       
T  20176087 gggacatttgtaatttttctatattttattcatgtaattctaattttcc-cgaaacacagcaattctagggtgttttgatgtaattcatgaagaaatttt 20175989  T
Q  193 gcaaatcggcaaagcaaaacat 214  Q
    ||||||||||||||||| ||||    
T  20175988 gcaaatcggcaaagcaagacat 20175967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 21228518 - 21228336
Alignment:
Q  32 caaacatttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggaca-tttgtaatgttttctatttgagtcatgta 130  Q
    ||||||||||||||||||||| ||||||  || | |||| ||| | ||||| ||  | ||||| |||||| ||| ||||||||||  || || |||||||    
T  21228518 caaacatttttatttagttttgatccaagttacaggagttttagagcaattgcctatggtttttgggacattttttaatgttttcatttcgaatcatgta 21228419  T
Q  131 attctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaa 211  Q
    ||| ||| ||||| |||||| ||||| ||||||   || |||||||||||| ||| | |||||| ||||| ||||||| |||||    
T  21228418 attatag-ttttctcgaaacgaagcagttctagggtgtttttgatgtaattcaaggaaaaatcatgcaaaacggcaaaacaaaa 21228336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 24751309 - 24751423
Alignment:
Q  102 tttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaat 198  Q
    |||||||| |||||||| |||||||||||||||||| |||| |   ||| | | |||||||||| ||||| ||||||||| | ||||||| || ||||||    
T  24751309 tttgtaatcttttctatattgagtcatgtaattctatttttcc---aaaaacatcaattctagggtgttttgatgtaattcacgaagaaaccatgcaaat 24751405  T
Q  199 cggcaaagcaaaacattt 216  Q
    || |||||||||||||||    
T  24751406 cgacaaagcaaaacattt 24751423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 8317540 - 8317607
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaatt 159  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||||||||| ||||||| |||||||    
T  8317540 tttcgggacttttgtaatgttttctatatttgagtc-tgtaattctagtttttc-cgaaacatagcaatt 8317607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 13281778 - 13281967
Alignment:
Q  43 atttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacat-ttgtaatgttttctatttgagtcatgtaattctagtttt 141  Q
    ||||||||||||||||||||| | |||||||| |||||||  |  | ||||| |||| |  || |||| ||| ||||| || |||||||||| ||||||     
T  13281778 atttagttttaatccaaaatagaggagtattagaacaattgtctatggtttttgggataacttttaatatttactattcgattcatgtaattttagtttc 13281877  T
Q  142 tcgcgaaacaaagcaattcta-ggtgtt-tgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattttaaatatttgtgaa 230  Q
     |   ||||| |||||||||| |||||| | | |||||| ||||||| |||| ||||||| |||||||||||||| || |||| |||||||    
T  13281878 -ctataaacatagcaattctacggtgttctcacgtaattcaagaagatatcatgcaaatcagcaaagcaaaacatcttgaatacttgtgaa 13281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 5236969 - 5237081
Alignment:
Q  96 gggacatttgtaatgttttct--atttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaagaaatc 190  Q
    ||||| |||||||||||||||  ||||||||| ||||||||||||||| | || |||| ||||||| |||| |   ||||| |||||| | |||||||||    
T  5236969 gggacttttgtaatgttttctgtatttgagtc-tgtaattctagttttcc-cgtaacatagcaattttaggggggttttgaagtaattcacgaagaaatc 5237066  T
Q  191 acgcaaatcggcaaa 205  Q
    | |||||||||||||    
T  5237067 atgcaaatcggcaaa 5237081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 1732591 - 1732544
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||||| ||||  |||||| ||||||||||||||||||||||    
T  1732591 tttgatgtaattcaagacaaaatcatgcaaatcggcaaagcaaaacat 1732544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 10332398 - 10332277
Alignment:
Q  96 gggacatttgtaatgttttctattt--gagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaagaaatc 190  Q
    ||||||||||||||||||||||| |  ||| | |||| ||||| |||||| ||||||| | ||||||||||   | |||||||||||| | |||||||||    
T  10332398 gggacatttgtaatgttttctatattcgagcc-tgtagttcta-tttttcccgaaacatatcaattctaggatgtttttgatgtaattcatgaagaaatc 10332301  T
Q  191 acgcaaatcggcaaagcaaaacat 214  Q
    | ||| ||||||||| ||| ||||    
T  10332300 atgcatatcggcaaaacaagacat 10332277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 1254872 - 1254921
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattt 216  Q
    |||||||||||| | |||||||||| |||||||| |||||||| ||||||    
T  1254872 tttgatgtaattcacgaagaaatcaagcaaatcgacaaagcaagacattt 1254921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 3585621 - 3585698
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtgttt 169  Q
    ||||| ||| ||| |||||||||||||  ||||||| ||||||||||||||||| ||||||| ||||||| |||| ||||    
T  3585621 tttcgtgacttttataatgttttctatatttgagtc-tgtaattctagtttttc-cgaaacatagcaattttaggggttt 3585698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 5471913 - 5471949
Alignment:
Q  173 gtaatttaagaagaaatcacgcaaatcggcaaagcaa 209  Q
    |||||| |||||||||||| |||||||||||||||||    
T  5471913 gtaattcaagaagaaatcatgcaaatcggcaaagcaa 5471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 28280336 - 28280155
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattc 134  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||  |  | ||||| ||||||||| |||||||||| ||||||||| ||||||||     
T  28280336 catttttatttagttttaatccaaaatagaggagtattagaacaattgtctatggtttttgggacattttgtaatgttttatatttgagttatgtaatta 28280237  T
Q  135 tagtttttcgcgaaacaaagcaattctag-gtgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||  |||||| | ||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  28280236 tagtttttctagaaacataacaattctagagtgttttgatgtaattcaagaagaaatcatgcaaatcggcaaagcgaaacat 28280155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 20532597 - 20532691
Alignment:
Q  68 agtattataacaatttcccgtagttttcgggacatttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta 162  Q
    |||||||||||||||  |  | |||||  |||||||||||| ||||||||||||||||||||||||||||| |||   |||||| ||||||||||    
T  20532597 agtattataacaattgtctatggtttttaggacatttgtaacgttttctatttgagtcatgtaattctagtattttatgaaacatagcaattcta 20532691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 17336468 - 17336555
Alignment:
Q  135 tagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattttaaa 220  Q
    |||||||||  |||||| | |||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||| ||||||||||||||    
T  17336468 tagtttttcctgaaacatatcaattctagggtgttttgatgtaattcaagaataaatcatgcaaatcggcaaaacaaaacattttaaa 17336555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 21089451 - 21089550
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacat-ttgtaatgttttctatttgagtcatgtaattct 135  Q
    ||||||||||| ||||||||||||||| | || ||||  |||||||  |  | ||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  21089451 atttttatttatttttaatccaaaatagaggactattgaaacaattatctatggttttcgagacatgttgtaatgttttctatttgagtcatataattct 21089550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 32415874 - 32416057
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattct 135  Q
    ||||||||| || ||| ||||||  || | |||| ||| ||||||||||  | ||||| ||||||||| |||||||||||  ||  ||||||||||||||    
T  32415874 atttttattcagcttttatccaagttacaggagttttagaacaatttcctatggtttttgggacattttgtaatgttttcatttcaagtcatgtaattct 32415973  T
Q  136 agtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacatttt 217  Q
    |||||| | | |||| || ||||| ||||   | |||||||||||| |||   |||||| ||||||||||||| |||||||||||    
T  32415974 agtttt-ctcaaaacgaaacaattttagggtgtttttgatgtaattcaaggcaaaatcatgcaaatcggcaaaacaaaacatttt 32416057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 15520895 - 15520852
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaa 210  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  15520895 tttgatgtaattcaagaagaaatcatgcaaatcggcaaagcaaa 15520852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 18832220 - 18832095
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgtt--tgatgtaatttaagaaga 186  Q
    |||||||||||||||||||||||||||  |||||| |||||||   |||||| | | ||| ||||||| | |||| ||||  |||||||||| | |||||    
T  18832220 tttcgggacatttgtaatgttttctatatttgagt-atgtaatcagagttttcc-caaaaaaaagcaaatatagggtgttcttgatgtaattcacgaaga 18832123  T
Q  187 aatcacgcaaatcggcaaagcaaaacat 214  Q
    ||||| ||||||||||||||||| ||||    
T  18832122 aatcatgcaaatcggcaaagcaatacat 18832095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 19003864 - 19003980
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    |||| |||| |||||||||||||||||  ||||||| ||||||||||||||| | ||||||| | ||||| |||| |   ||||| |||||| | |||||    
T  19003864 tttcaggacttttgtaatgttttctatatttgagtc-tgtaattctagttttcc-cgaaacataacaattttagggggtttttgaagtaattcacgaaga 19003961  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  19003962 aatcatgcaaatcggcaaa 19003980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 28254885 - 28254764
Alignment:
Q  96 gggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattc--taggtgtttgatgtaatttaagaagaaatca 191  Q
    ||||||||| |||| ||||||||  |||||| |||||||||||  ||||| ||||||| ||||||||  |||   ||||||| |||| | ||||||||||    
T  28254885 gggacatttataatattttctatatttgagtaatgtaattcta-cttttcccgaaacatagcaattctttagtgttttgatgcaattcacgaagaaatca 28254787  T
Q  192 cgcaaatcggcaaagcaaaacat 214  Q
     |||||| |||||||||| ||||    
T  28254786 tgcaaattggcaaagcaagacat 28254764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 31600256 - 31600299
Alignment:
Q  171 atgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||    
T  31600256 atgtaatttacgaagaaatcatgcaaatcggcaaagcaagacat 31600299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 24807369 - 24807413
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaa 211  Q
    |||||||||||| |||||||||| | |||||||||||| ||||||    
T  24807369 tttgatgtaattcaagaagaaattatgcaaatcggcaatgcaaaa 24807413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 20316216 - 20316410
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgta-gttttcgggacattt-gtaatgttttctatttgagtcatgtaattc 134  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||  || | ||| ||||||||| |||||| |||||||||||||||||||||||    
T  20316216 atttttatttagttttaatccaaaatagatgagtattagaataatttcc--tacgattttgggacattttgtaatgctttctatttgagtcatgtaattc 20316313  T
Q  135 tagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattttaaatatttgtgaa 230  Q
    ||||||||| | |||||  | |||| || |||| |||||||||||| |||||||||||| |||| | |||||| ||||||||| | || |||||||||    
T  20316314 tagtttttc-caaaacattgtaattttatggtgttttgatgtaattcaagaagaaatcatgcaacttggcaaaacaaaacattctgaagatttgtgaa 20316410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 19547091 - 19547277
Alignment:
Q  36 catttttatttagttttaatccaaaataaat----gagtattataacaatttcccgtagttttcgggacatttgtaatgttttctat-ttgagtcatgta 130  Q
    |||||| |||||||||||||||||||| |||    |||||||| | ||||| ||  ||  ||| |||||| |||||||||||||||| || |||||||||    
T  19547091 cattttcatttagttttaatccaaaattaatagaggagtattaaagcaattgcctataacttttgggacacttgtaatgttttctatattaagtcatgta 19547190  T
Q  131 attctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattt 216  Q
    ||||||||||| | ||||||||| |||||||||| ||||| ||||||||| |||||||||||| |||||||||||||  |||||||||    
T  19547191 attctagttttcc-cgaaacaaaacaattctagggtgttttgatgtaattcaagaagaaatcatgcaaatcggcaaaataaaacattt 19547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 25117964 - 25118093
Alignment:
Q  91 ttttcgggacatttgtaatgtttt-ctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgttt-gatgtaatttaagaaga 186  Q
    ||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||  |||||| |||||||||| ||||||| ||||||||| |||||||    
T  25117964 ttttcaggacatttgtaatttttttctatattgagtcatgtaattctagtttttcctgaaacatagcaattctaaggtgttttgatgtaattcaagaaga 25118063  T
Q  187 aatcacgcaaatcggcaaagcaaaacattt 216  Q
    ||||| |||||||| |||||||||| ||||    
T  25118064 aatcatgcaaatcgacaaagcaaaatattt 25118093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 22217039 - 22217213
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctatttgagtcatgtaattcta 136  Q
    ||||||||| ||||||||||||||||||| ||| |||| ||||||| ||  | | ||||  |||||||   ||||||||||||||||||||| |||||||    
T  22217039 atttttattcagttttaatccaaaataaaggagcattagaacaattgcctat-gatttcatgacattttgtatgttttctatttgagtcatgaaattcta 22217137  T
Q  137 gtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaa 210  Q
    ||||||| ||||||| | || ||||| |||| |||||||||||| ||||||| |||| ||||||||  ||||||||    
T  22217138 gtttttcccgaaacatatcagttctagggtgttttgatgtaattcaagaagatatcatgcaaatcgataaagcaaa 22217213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 7613723 - 7613609
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattct-aggtg-tttgatgtaatttaagaagaaatcacgcaaatc 199  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||| |  |||| ||||| || ||| |||||||||||| |||||||    
T  7613723 tttgtaatgttttctatttgagttatgtaattctagtttttctcgaaacatggcaattatggggtgttttgacgtgattcaagaagaaatcatgcaaatc 7613624  T
Q  200 ggcaaagcaaaacat 214  Q
    |||||||||||||||    
T  7613623 ggcaaagcaaaacat 7613609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 11241150 - 11240995
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctattt-gagtcatgtaattct 135  Q
    |||||||||||||||||||| | |||  | |||||||| |||||||     |  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  11241150 atttttatttagttttaatctagaatggaggagtattagaacaattgtttatgatttttgggacatttgtaatgttttctattttgagtcatgtaattct 11241051  T
Q  136 agtttttcgcgaaacaaagcaattctagg-tg-tttgatgtaatttaagaagaaat 189  Q
    |||||||| ||||||| || ||||||||| || ||||| |||||| ||||||||||    
T  11241050 agtttttcccgaaacatagaaattctaggatgttttgaggtaattcaagaagaaat 11240995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 17662006 - 17661823
Alignment:
Q  38 tttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattcta 136  Q
    |||||||||||||||||||||||||||| |||||||| ||||||  ||  |  |||||  |||||||  |||||||||  ||||||||||||||||||||    
T  17662006 tttttatttagttttaatccaaaataaaggagtattagaacaatcgcctatgattttctcgacatttcataatgtttttcatttgagtcatgtaattcta 17661907  T
Q  137 g----tttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |    ||| |  | ||||| |||||||||| |||| |||||||||||| |||||||||||| ||||||||||| | ||||||||    
T  17661906 gtatttttatttcaaaacatagcaattctagggtgttttgatgtaattcaagaagaaatcatgcaaatcggcataacaaaacat 17661823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 10108247 - 10108118
Alignment:
Q  90 gttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaaga 186  Q
    ||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||  |||||| || |||| |||| ||||| ||||||||| |||||||    
T  10108247 gtttttgggacatttctaatgttttctatattgaatcatgtaattataatttttccagaaacatagtaattatagggtgttttgatgtaattgaagaaga 10108148  T
Q  187 aatcacgcaaatcggcaaagcaaaacattt 216  Q
    ||||| |||||||| |||| | ||||||||    
T  10108147 aatcatgcaaatcgacaaaacgaaacattt 10108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 11252228 - 11252343
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg--tttgatgtaatttaagaagaa 187  Q
    ||||||||| |||||||| ||||||||  ||||||| ||| ||||||||||||| ||||||| ||||||| |||| |  ||||| |||||| | ||||||    
T  11252228 tttcgggacttttgtaatattttctatatttgagtc-tgtgattctagtttttc-cgaaacatagcaattttagggggttttgaagtaattcacgaagaa 11252325  T
Q  188 atcacgcaaatcggcaaa 205  Q
    |||| |||||||||||||    
T  11252326 atcatgcaaatcggcaaa 11252343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 1832162 - 1832277
Alignment:
Q  101 atttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtgttt-gatgtaatttaagaagaaatcacgcaaa 197  Q
    ||||||||||||||||||  || ||||| |||||| || || ||| ||||||| | ||||||| ||||||| ||||||||| | ||| |||||| |||||    
T  1832162 atttgtaatgttttctatatttaagtcaagtaattata-ttcttcccgaaacataacaattcttggtgttttgatgtaattcacgaaaaaatcatgcaaa 1832260  T
Q  198 tcggcaaagcaaaacat 214  Q
    |||||||||||| ||||    
T  1832261 tcggcaaagcaatacat 1832277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 19335320 - 19335437
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaatt-ctaggtgttt--gatgtaatttaagaagaaatcacgcaaat 198  Q
    ||||||||||||||  || |||||||||||||||||| || |   ||||  ||||||| | ||||||||  ||||||||| |||||||||||| ||||||    
T  19335320 tttgtaatgttttcatttcgagtcatgtaattctagtcttccta-aaaccgagcaatttcaaggtgtttttgatgtaattcaagaagaaatcatgcaaat 19335418  T
Q  199 cggcaaagcaaaacatttt 217  Q
    ||| |||||||| ||||||    
T  19335419 cggtaaagcaaagcatttt 19335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 10089656 - 10089536
Alignment:
Q  111 ttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgtttga-tgtaatttaagaagaaatcacgcaaatcggcaaagca 208  Q
    |||||||||||||||||||||||| || ||| | | ||||| || ||||||||| ||||| | | ||||| |||||||||||| |||| || ||||| ||    
T  10089656 ttttctatttgagtcatgtaattccaggttt-ctcaaaacatagaaattctagggtgttttaatataattcaagaagaaatcatgcaagtctgcaaaaca 10089558  T
Q  209 aaacattttaaatatttgtgaa 230  Q
    ||||||||| || | |||||||    
T  10089557 aaacattttcaagacttgtgaa 10089536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 17711304 - 17711188
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    ||||||||| ||||| |||||||||||  ||||||| | ||||||||||||| | ||||||| ||||||| |||| |   ||||| |||||| | |||||    
T  17711304 tttcgggacttttgtgatgttttctatatttgagtctt-taattctagttttcc-cgaaacatagcaattttaggggggttttgaagtaattcacgaaga 17711207  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  17711206 aatcatgcaaatcggcaaa 17711188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 19538989 - 19539022
Alignment:
Q  98 gacatttgtaatgttttctatttgagtcatgtaa 131  Q
    ||||||||||||||||||||||||||||||||||    
T  19538989 gacatttgtaatgttttctatttgagtcatgtaa 19539022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 20828204 - 20828363
Alignment:
Q  57 caaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttct--atttgagtcatgtaattctagtttttcgcgaaacaaag 154  Q
    ||||||||| |||||||| ||||||| ||  |  |||| ||||||||||||||| |||||  ||||||||| ||||||   |||||| | ||||||| ||    
T  20828204 caaaataaaggagtattacaacaattgcctatgatttt-gggacatttgtaatggtttctgtatttgagtc-tgtaatgagagttttcc-cgaaacatag 20828300  T
Q  155 caattctagg---tgtttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    ||||| ||||   |  ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  20828301 caattttagggcgttcttgatgtaattcacgaagaaatcatgcaaatcggcaaagcaagacat 20828363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 22346054 - 22345951
Alignment:
Q  112 tttctatttgagtcatgtaattctagtttttcgcgaaacaaagc-aattctaggtgtt-tgatgtaatttaagaagaaatcacgcaaatcggcaaagcaa 209  Q
    |||||||||||||||||||||||||| ||| |   ||| | ||| ||||| ||||||| |||||||||| |||||||||||| |||||| |||||  |||    
T  22346054 tttctatttgagtcatgtaattctag-tttccctaaaatatagcaaattcaaggtgttatgatgtaattcaagaagaaatcatgcaaattggcaatacaa 22345956  T
Q  210 aacat 214  Q
    |||||    
T  22345955 aacat 22345951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 19667052 - 19667087
Alignment:
Q  96 gggacatttgtaatgttttctatttgagtcatgtaa 131  Q
    ||||||||||||||||||||||||||| ||||||||    
T  19667052 gggacatttgtaatgttttctatttgactcatgtaa 19667087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 9849833 - 9849928
Alignment:
Q  116 tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgtttg-atgtaatttaagaagaaatcacgcaaatcggcaaagcaaaa 211  Q
    ||||||||| |||||||| | ||| ||| ||||||| ||||||| |||| |||||  |||||||| | |||||||||| |||||||||||||||||||    
T  9849833 tatttgagt-atgtaatttt-gttcttcccgaaacatagcaattttagggtgtttttatgtaattcacgaagaaatcatgcaaatcggcaaagcaaaa 9849928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 14573438 - 14573327
Alignment:
Q  101 atttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaagaaatcacgca 195  Q
    ||||||||||||||||||  |||| | ||||||||||| || ||| ||||||| ||||||| |||   || |||||||||||| |  ||||||||| |||    
T  14573438 atttgtaatgttttctatatttgaat-atgtaattcta-ttcttcccgaaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgca 14573341  T
Q  196 aatcggcaaagcaa 209  Q
    ||||| ||||||||    
T  14573340 aatcgtcaaagcaa 14573327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 17024789 - 17024839
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttt 141  Q
    ||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  17024789 tttcgggacatttgtaatggtttctatatttgagtc-tgtaattctagtttt 17024839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 23970762 - 23970805
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaatt 133  Q
    |||||| |||||||||||||||||  ||||||||||||||||||    
T  23970762 tttcggaacatttgtaatgttttctgtatttgagtcatgtaatt 23970805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 27912115 - 27911940
Alignment:
Q  38 tttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattcta 136  Q
    |||||||||||||||||||||||||| | |||||||| |||||||  |  |  ||||| |||||||| ||||||||| |||||||||||||  |||||||    
T  27912115 tttttatttagttttaatccaaaatagaggagtattagaacaattgtctatgattttcaggacattttgtaatgtttgctatttgagtcat--aattcta 27912018  T
Q  137 gtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaac 212  Q
    ||||||   |||||| |||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||    
T  27912017 gttttttcggaaacatagcaattctagggtgttttgatgtaattcaagaaaaaatcatgcaaatcggcaaagcaaaac 27911940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 26581573 - 26581444
Alignment:
Q  90 gttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaaga 186  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||  |||||| ||||||| |||| ||||| ||||||||  |||||||    
T  26581573 gttttcgggacatttgtaatgttttctatattgagtcatgtaattatagttcttcctgaaacatagcaattttagggtgttttgatgtaatcaaagaaga 26581474  T
Q  187 aatcacgcaaatcggcaaagcaaaacattt 216  Q
    |||||  ||||||||| |||||||||||||    
T  26581473 aatcatccaaatcggctaagcaaaacattt 26581444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 17016942 - 17017062
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag-gtg-tttgatgtaatttaagaagaaatcacgcaaatc 199  Q
    |||||| ||||||||||||||||| ||||||||||||||||  | ||||| ||||||||||| ||| |||||||||||  ||||| |||||| |||||||    
T  17016942 tttgtattgttttctatttgagtcttgtaattctagttttttccaaaacatagcaattctagagtgttttgatgtaatccaagaataaatcatgcaaatc 17017041  T
Q  200 ggcaaagcaaaacattttaaa 220  Q
    |||||| |||||||| |||||    
T  17017042 ggcaaatcaaaacatcttaaa 17017062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 20033161 - 20033332
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctatttgagtcatgtaattct 135  Q
    |||||| | |||||||||||| | |||| | |||||||| ||||||| ||  | |||||||| ||||||||||||||||||| |||| | ||||||||||    
T  20033161 cattttcagttagttttaatcaagaatagaggagtattagaacaattacctatggttttcggaacatttgtaatgttttctaattgaattatgtaattct 20033260  T
Q  136 agtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaa 205  Q
    ||||||   | ||||| | |||||||| |||| ||| || || || |||||||||||| |||||||| ||||    
T  20033261 agttttctccaaaacataccaattctagggtgttttaatttagttcaagaagaaatcatgcaaatcgacaaa 20033332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 15542407 - 15542523
Alignment:
Q  92 tttcgggacatttgtaatgttttctattt--gagtcatgtaattctagtttttcgcgaaacaaagcaattcta---ggtgtttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||||| |  |||| |||||||||||||||||| ||||||| ||||||| ||   ||| ||||| |||||| | |||||    
T  15542407 tttcgggacttttgtaatgttttctatatctgagt-atgtaattctagtttttc-cgaaacatagcaattttaaggggtttttgaagtaattcacgaaga 15542504  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    |||||||||||||||||||    
T  15542505 aatcacgcaaatcggcaaa 15542523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 14235387 - 14235508
Alignment:
Q  96 gggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatca 191  Q
    |||||||||||||||||||||||  ||||||||||||||| || || ||| ||||||| ||||||| |||| ||||| ||||||||| | ||||||||||    
T  14235387 gggacatttgtaatgttttctatatttgagtcatgtaattata-ttattcccgaaacatagcaattttagggtgttttgatgtaattcacgaagaaatca 14235485  T
Q  192 cgcaaatcggcaaagcaaaacat 214  Q
     |||||| |||||| ||| ||||    
T  14235486 tgcaaattggcaaaacaagacat 14235508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 12262211 - 12262321
Alignment:
Q  106 taatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tg-tttgatgtaatttaagaagaaatcacgcaaatcggca 203  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| | ||||    |||| || ||||||||||||||||||||||||| | |||| ||||    
T  12262211 taatgttttctatttgagttatgtaattctagtttttcccgaaaaatagcagccataggatgttttgatgtaatttaagaagaaatcatgaaaattggca 12262310  T
Q  204 aagcaaaacat 214  Q
    || ||| ||||    
T  12262311 aaacaatacat 12262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 27116326 - 27116438
Alignment:
Q  96 gggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg--tgtttgatgtaatttaagaagaaatca 191  Q
    ||||||||||||||||||||  ||||| ||| ||||||||||| || ||| ||||||| ||||||||||||  | ||| |||||||| |  |||||||||    
T  27116326 gggacatttgtaatgttttctatattttagt-atgtaattcta-ttcttcccgaaacatagcaattctagggtttttttatgtaattcacaaagaaatca 27116423  T
Q  192 cgcaaatcggcaaag 206  Q
     ||||||||||||||    
T  27116424 tgcaaatcggcaaag 27116438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 21448755 - 21448806
Alignment:
Q  91 ttttcgggacattt-gtaatgttttctatttgagtcatgtaattctagtttt 141  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  21448755 ttttcgggacattttgtaatgttttcattttgagtcatgtaattctagtttt 21448806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 21536949 - 21537056
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacattt-gtaatgttttctatttgagtcatgtaattc 134  Q
    |||||||| |||||||| ||||||| || | |||| ||| ||||||| || ||  |||| ||||||||| || || ||||   |||||||||||||||||    
T  21536949 catttttagttagttttgatccaaattataggagttttaaaacaattgcctgtgatttttgggacattttgtgatctttttattttgagtcatgtaattc 21537048  T
Q  135 tagttttt 142  Q
    ||||||||    
T  21537049 tagttttt 21537056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 31260803 - 31260846
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaa 210  Q
    ||||||||||||||||||||||||| ||||| || |||||||||    
T  31260803 tttgatgtaatttaagaagaaatcatgcaaaacgacaaagcaaa 31260846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 26022393 - 26022277
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta---ggtgtttgatgtaatttaagaaga 186  Q
    |||||||||||||||||||||||||||  ||||||| | |||||||||| || |  |||||| ||||||| ||   ||| ||||| |||||| | | |||    
T  26022393 tttcgggacatttgtaatgttttctatatttgagtctt-taattctagtcttcct-gaaacatagcaattttaagaggtttttgaagtaattcacggaga 26022296  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  26022295 aatcatgcaaatcggcaaa 26022277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 15631022 - 15631095
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggt 165  Q
    ||||| ||| ||||||||||||||  ||||||||| |||||||||||| ||||| ||||||| ||||||| |||||    
T  15631022 tttcgagacttttgtaatgttttctatatttgagt-atgtaattctag-ttttcccgaaacatagcaattttaggt 15631095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 22507501 - 22507589
Alignment:
Q  118 tttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaagaaatcacgcaaatcggcaaa 205  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| |||| |   ||||| |||||| | |||||||||| |||||||||||||    
T  22507501 tttgagtc-tgtaattctagttttcc-cgaaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgcaaatcggcaaa 22507589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 3003043 - 3002930
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgttt-gatgtaatttaagaagaaatcacgcaaatc 199  Q
    ||||||||||||||||||||||||||||||||||| |||| |  |||||| |||||||||| ||||||| ||||||||| |||||||||||| |||||||    
T  3003043 tttgtaatgttttctatttgagtcatgtaattctacttttcct-gaaacatagcaattctacggtgttttgatgtaattcaagaagaaatcatgcaaatc 3002945  T
Q  200 ggcaaagcaaaacat 214  Q
    |||||||||||||||    
T  3002944 ggcaaagcaaaacat 3002930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 26092950 - 26092775
Alignment:
Q  45 ttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttc 143  Q
    |||||||| ||| | |||| | |||||||| |||||||  |  | |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||     
T  26092950 ttagttttcatctagaatagaggagtattagaacaattgtctatggttttcgggacatttgtaat-ttttctatattgagtcatataattctagtttttt 26092852  T
Q  144 g--cgaaacaaagcaattcta-ggtgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattt 216  Q
       ||||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  26092851 ttccgaaacatagcaattctatggtgttttgatgtaattcaagaagaaatcatgcaaatcggtaaagcaaaacattt 26092775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 4838963 - 4838860
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctatttgagtcatgtaattct 135  Q
    |||||| | |||||||||||||| |||    |||||||| ||||||||||  | ||||| |||| |||||||||||||||| ||||| ||||||||||||    
T  4838963 cattttcaattagttttaatccagaatg---gagtattagaacaatttcctatggtttttgggatatttgtaatgttttctgtttgactcatgtaattct 4838867  T
Q  136 agttttt 142  Q
    |||||||    
T  4838866 agttttt 4838860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 25530774 - 25530881
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggaca-tttgtaatgttttctatttgagtcatgtaattc 134  Q
    |||||||||||||||||||||||||||| | |||||||| ||||| |     ||||||| |||||| ||| || || |||||||||||||||| ||||||    
T  25530774 catttttatttagttttaatccaaaatagaggagtattagaacaactatttatagtttttgggacattttttagtgctttctatttgagtcatataattc 25530873  T
Q  135 tagttttt 142  Q
    ||||||||    
T  25530874 tagttttt 25530881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 31284002 - 31284123
Alignment:
Q  92 tttcgggacatttgtaatgttttct---atttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaag 185  Q
    ||||||||||||||||||||||| |   ||||||||| |||||||||| || ||| | ||||| ||||||| ||||   | |||||||||||| | ||||    
T  31284002 tttcgggacatttgtaatgtttttttatatttgagtc-tgtaattcta-ttattcccaaaacatagcaattttagggtgtttttgatgtaattgacgaag 31284099  T
Q  186 aaatcacgcaaatcggcaaagcaa 209  Q
    |||||| |||||||||||||||||    
T  31284100 aaatcatgcaaatcggcaaagcaa 31284123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 18466807 - 18466917
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcacgcaaatc 199  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||| || |||| || |||| ||| |||||| | ||||| |||| | ||||||     
T  18466807 tttgtaatgttttctattcgagtcatgtaatttta-tttttcccgaaacatagaaattatatggtgttttaatgtaactaaagaaaaaataatgcaaatt 18466905  T
Q  200 ggcaaagcaaaa 211  Q
    ||||||||||||    
T  18466906 ggcaaagcaaaa 18466917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 27073940 - 27073834
Alignment:
Q  102 tttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaagaaatcacgcaa 196  Q
    |||||||||||||||||  ||||||| ||||||||||||||| | ||||||| ||||||| |||   || ||||| |||||| | |||||||||| ||||    
T  27073940 tttgtaatgttttctatatttgagtc-tgtaattctagttttcc-cgaaacatagcaattttagcgggtttttgaagtaattcacgaagaaatcatgcaa 27073843  T
Q  197 atcggcaaa 205  Q
    |||||||||    
T  27073842 atcggcaaa 27073834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 51118524 - 51118631
Alignment:
Q  36 catttttatttagttttaatccaaaa-taaatgagtattataacaatttcccgtagttttcgggacat-ttgtaatgttttctatttgagtcatgtaatt 133  Q
    ||||||||||||||||| |||||||| |||| |||| ||| ||||||| ||  | ||||||||||  | |||||||||||||  || || ||||||||||    
T  51118524 catttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatggttttcgggaattattgtaatgttttcatttcgaatcatgtaatt 51118623  T
Q  134 ctagtttt 141  Q
    ||||||||    
T  51118624 ctagtttt 51118631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 14977828 - 14977692
Alignment:
Q  67 gagtattataacaatttcccgtagttttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg 164  Q
    |||||||||||||||| ||  | | ||||||||| ||||||||||||||  ||||||||| |||||||||||| ||||| ||||||| |||| || ||||    
T  14977828 gagtattataacaattgcctat-gatttcgggacttttgtaatgttttctatatttgagt-atgtaattctag-ttttcccgaaacatagcatttttagg 14977732  T
Q  165 tg---tttgatgtaatttaagaagaaatcacgcaaatcgg 201  Q
     |   ||||| |||||| | |||||||||| |||||||||    
T  14977731 ggggttttgaagtaattcacgaagaaatcatgcaaatcgg 14977692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 8765672 - 8765557
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta---ggtgtttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||| |||||  |||||| ||||||| ||   ||| ||||| |||||| | |||||    
T  8765672 tttcgggacttttgtaatgttttctatatttgagtc-tgtaattctag-ttttcttgaaacatagcaattttagggggtttttgaagtaattcacgaaga 8765575  T
Q  187 aatcacgcaaatcggcaa 204  Q
    ||||| ||| ||||||||    
T  8765574 aatcatgcagatcggcaa 8765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 7208442 - 7208395
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||||||||||| |||||| |||||| | |||||||||||||    
T  7208442 tttgatgtaatttaagaaaaaatcatgcaaattgacaaagcaaaacat 7208395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 13906682 - 13906754
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg 164  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||| || ||| ||||||| ||||||| ||||    
T  13906682 tttcgggacatttgtaatgttttctatatttgagtc-tgtaattcta-ttcttcccgaaacatagcaattttagg 13906754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 16242302 - 16242405
Alignment:
Q  102 tttgtaatgttttctatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaagaaatcacgcaaat 198  Q
    ||||||| |||||||||||||||| ||||||||||||||| | ||||||| ||||||| |||| |   |||||  ||||| | |||||||||| ||||||    
T  16242302 tttgtaaagttttctatttgagtc-tgtaattctagttttgc-cgaaacatagcaattttaggggggttttgaattaattcacgaagaaatcatgcaaat 16242399  T
Q  199 cggcaa 204  Q
     |||||    
T  16242400 tggcaa 16242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 20886789 - 20886742
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  20886789 tttgatgtaattcacgaagaaatcatgcaaatcggcaaagcaagacat 20886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 8145246 - 8145130
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta---ggtgtttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||| ||| ||||| ||||||| ||||||| ||   ||| |||||  ||||| | ||| |    
T  8145246 tttcgggacttttgtaatgttttctatatttgagt-atgtaattatag-ttttcccgaaacatagcaattttagggggtttttgaaataattcacgaaca 8145149  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  8145148 aatcatgcaaatcggcaaa 8145130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 18747804 - 18747754
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttt 141  Q
    ||||||||| ||||||||||||||  ||||||||| ||||||||||||||||    
T  18747804 tttcgggacttttgtaatgttttctatatttgagt-atgtaattctagtttt 18747754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 27871257 - 27871156
Alignment:
Q  117 atttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag-gtgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||||||||||||| |||||  ||||||| | ||||||||| |||||| ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  27871257 atttgagtcatgtaattctaattttttccgaaacataacaattctagagtgttttgatgtaattcaaggagaaatcatgcaaatcggcaaagcaaaacat 27871158  T
Q  215 tt 216  Q
    ||    
T  27871157 tt 27871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 34369320 - 34369198
Alignment:
Q  97 ggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgttt-gatgtaatttaagaagaaatcacg 193  Q
    ||||||||||||||  || ||| ||||||||||||||||||| ||||| ||||||| ||||||| || ||||||| ||| ||||| |||| ||||||| |    
T  34369320 ggacatttgtaatgaattttatattgagtcatgtaattctagcttttcccgaaacatagcaattttatggtgttttgatataattcaagatgaaatcatg 34369221  T
Q  194 caaatcggcaaagcaaaacattt 216  Q
    |||||||||||| ||||||||||    
T  34369220 caaatcggcaaaacaaaacattt 34369198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 25938584 - 25938402
Alignment:
Q  38 tttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgt---aatgttttctatttgagtcatgtaattc 134  Q
    |||||||||||||||||||||||||| |  ||||||| | ||||| ||  | ||||| ||||||||| |   | |||||||||||||||| ||||||||     
T  25938584 tttttatttagttttaatccaaaatagaatagtattagagcaattgcctatggtttttgggacattttttttattgttttctatttgagtaatgtaatta 25938485  T
Q  135 tagtttttc-gcgaaacaaagcaattctag-gtg-tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||  | ||||| ||||||  ||| ||| |||||||||||| |||||||||| | |||||| || ||| ||||||||    
T  25938484 tagtttttcaccaaaacatagcaatcttagagtgttttgatgtaattcaagaagaaattatgcaaattggtaaaacaaaacat 25938402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 32141490 - 32141615
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaa 187  Q
    ||||| |||||||||||||||||||||  |||||||||||||||| | || |||  |||||| |||||||||| | ||||| |||| |||| | ||||||    
T  32141490 tttcgagacatttgtaatgttttctatatttgagtcatgtaattcaa-ttcttcctgaaacatagcaattctaagatgttttgatgaaattcacgaagaa 32141588  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    |||| ||||||||||||| ||| ||||    
T  32141589 atcatgcaaatcggcaaaacaagacat 32141615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 25537554 - 25537438
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    |||| |||| |||||||||||||||||  ||||||| ||||||||||||||| | ||||||| ||||||| |||| |   ||||| |||||| | |||||    
T  25537554 tttctggacttttgtaatgttttctatatttgagtc-tgtaattctagttttcc-cgaaacatagcaattttaggggggttttgaagtaattcacgaaga 25537457  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  25537456 aatcatgcaaatcggcaaa 25537438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 27907621 - 27907737
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||  |||||||||  ||||||||||| ||||| ||||||| ||||||| ||||   | ||||| |||||| | |||||    
T  27907621 tttcgggacttttgtaatgttttctatatttgagt-ttgtaattctag-ttttcccgaaacatagcaattttagggtttttttgaagtaattcacgaaga 27907718  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  27907719 aatcatgcaaatcggcaaa 27907737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 30682300 - 30682428
Alignment:
Q  90 gttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgtt-tgatgtaatttaagaaga 186  Q
    |||||||||||| | |||||||||||||| |||| ||||| || | ||||||  | ||||||| |||||||||||| |||| ||||||| || |||||||    
T  30682300 gttttcgggacagt-gtaatgttttctatattgaatcatgcaactatagtttcccccgaaacatagcaattctagggtgttatgatgtagttcaagaaga 30682398  T
Q  187 aatcacgcaaatcggcaaagcaaaacattt 216  Q
    ||||| ||||||| ||  ||||||||||||    
T  30682399 aatcatgcaaatcagcttagcaaaacattt 30682428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 32438790 - 32438906
Alignment:
Q  102 tttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgttt-gatgtaatttaagaagaaatcacgcaaat 198  Q
    ||||||||||||||||| ||||||||||||| |||| |||| | ||||||| |||||||||| |||||||  |||||||| | |||||||||| | ||||    
T  32438790 tttgtaatgttttctatgttgagtcatgtaactctacttttcc-cgaaacatagcaattctagggtgtttaaatgtaattcacgaagaaatcatgtaaat 32438888  T
Q  199 cggcaaagcaaaacattt 216  Q
    || |||| ||||| ||||    
T  32438889 cgacaaaacaaaatattt 32438906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 8445650 - 8445697
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||    
T  8445650 tttgatgtaattcaagaagaaattatgcaaatcggcaaagcaaaacat 8445697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 29717457 - 29717579
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg--tgtttgatgtaatttaagaagaa 187  Q
    |||||||| ||||||||||||||||||  |||||| |||||||| |   | ||| ||||||| |||||||||| |  | |||||||||||| | ||||||    
T  29717457 tttcgggatatttgtaatgttttctatatttgagt-atgtaattat---tcttcccgaaacatagcaattctaaggttttttgatgtaattcacgaagaa 29717552  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    || | ||||||||||||||||| ||||    
T  29717553 ataatgcaaatcggcaaagcaatacat 29717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 25886290 - 25886362
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg 164  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||| ||||| ||||||| ||||||| ||||    
T  25886290 tttcgggacttttgtaatgttttctatatttgagtc-tgtaattctag-ttttcccgaaacatagcaattttagg 25886362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 28930272 - 28930150
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta---ggtgtttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||  |||||||||| | ||||| |||||||||  |||||| ||||||| ||   ||  ||||| |||||| | |||||    
T  28930272 tttcgggacttttgtaatgttttctatatttgagtc-tataattatagtttttc-tgaaacatagcaattttagaggggttttgaagtaattcacgaaga 28930175  T
Q  187 aatcacgcaaatcggcaaagcaaaa 211  Q
    ||||| ||||||||||||| |||||    
T  28930174 aatcatgcaaatcggcaaatcaaaa 28930150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 42153688 - 42153593
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggaca-tttgtaatgttttctatttgagtcatgta 130  Q
    |||||||||||||||||  |||||| || |||||| ||| ||||||| ||  | |||||||||||| ||| ||||||||||  || ||||||||||    
T  42153688 catttttatttagttttgttccaaattatatgagttttagaacaattgcctatggttttcgggacattttctaatgttttcatttcgagtcatgta 42153593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 18758299 - 18758232
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaatt 159  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||| ||||| ||||||| |||||||    
T  18758299 tttcgggacttttgtaatgttttctatatttgagtc-tgtaattctag-ttttcccgaaacatagcaatt 18758232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 17350976 - 17350860
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    |||| |||| |||||||||||||||||  |||||||  |||||||||||||| | ||||||| ||||||| |||| |   |||||  ||||| | |||||    
T  17350976 tttcaggacttttgtaatgttttctatatttgagtcc-gtaattctagttttcc-cgaaacatagcaattttagggggtttttgaattaattcacgaaga 17350879  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  17350878 aatcatgcaaatcggcaaa 17350860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 25196609 - 25196493
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    ||||||||| ||||||||||||||  |||||||||| |||| |||||| ||||| | ||||| ||||||| |||| |   ||||| |||||| | ||| |    
T  25196609 tttcgggacttttgtaatgttttctatatttgagtc-tgtatttctag-ttttcccaaaacatagcaattttagggggattttgaagtaattcacgaaaa 25196512  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  25196511 aatcaagcaaatcggcaaa 25196493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 27421069 - 27420945
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg--tgtttgatgtaatttaagaagaa 187  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| || || ||| ||||||| ||||||| ||||    |||| ||||||| | || |||    
T  27421069 tttcgggacatttgtaatgttttctatatttgagt-atgtaattata-ttcttcccgaaacatagcaattttaggatattttgttgtaattcacgatgaa 27420972  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    |||| | | ||||||||||||| ||||    
T  27420971 atcatgtatatcggcaaagcaagacat 27420945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 34395402 - 34395507
Alignment:
Q  37 atttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctatttgagtcatgtaattcta 136  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||| |   |  ||||| ||||||||||| |||||||||||||||||   ||||||||    
T  34395402 atttttatttagttttaatccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtcggataattcta 34395501  T
Q  137 gttttt 142  Q
    ||||||    
T  34395502 gttttt 34395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 21546866 - 21546993
Alignment:
Q  90 gttttcgggacatttgtaatgttttctatttga-gtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgtttga-tgtaatttaagaaga 186  Q
    ||||| |||||||||||||| |||||||| | | ||||||||||||||||||| | ||||||| |||||||||| ||||||| | ||||||| |||||||    
T  21546866 gtttttgggacatttgtaatattttctatatcaagtcatgtaattctagttttcctcgaaacatagcaattctagggtgttttagtgtaattcaagaaga 21546965  T
Q  187 aatcacgcaaatcggcaaagcaaaacattt 216  Q
    ||||| |  ||||| |||||| ||||||||    
T  21546966 aatcatg--aatcgacaaagctaaacattt 21546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 30356261 - 30356136
Alignment:
Q  92 tttcgggacatttgtaatgttttctattt--gagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaa 187  Q
    ||||||||||||| ||||||||| ||| |  |||||||||||||||| || ||| ||||||| | |||||||||| ||||| ||||||||| | | ||||    
T  30356261 tttcgggacatttataatgttttatatatatgagtcatgtaattcta-ttattcccgaaacatatcaattctaggatgttttgatgtaattcacggagaa 30356163  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    |||| ||||||||||||||||| ||||    
T  30356162 atcatgcaaatcggcaaagcaagacat 30356136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 32759961 - 32759852
Alignment:
Q  98 gacatttgtaatgttttcta--tttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacg 193  Q
    ||||| ||||||||||||||  ||||||||||||||||||| |||| | | ||||| |||||||||||| ||||| ||||||||| | |||||||||| |    
T  32759961 gacatgtgtaatgttttctaaatttgagtcatgtaattctacttttcc-caaaacatagcaattctaggatgttttgatgtaattcacgaagaaatcatg 32759863  T
Q  194 caaatcggcaa 204  Q
    |||||||||||    
T  32759862 caaatcggcaa 32759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 22564648 - 22564766
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtgt--ttgatgtaatttaagaaga 186  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||| ||| ||| ||||||| ||||||| || |||||  ||||||||||| | |||||    
T  22564648 tttcgggacatttgtaatgttttctatatttgagtc-tgtaattct-gttcttctcgaaacatagcaattttagggtgttgttgatgtaattcacgaaga 22564745  T
Q  187 aatcacgcaaatcggcaaagc 207  Q
    ||||| |||||||| ||||||    
T  22564746 aatcatgcaaatcgacaaagc 22564766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 27961254 - 27961095
Alignment:
Q  49 ttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcg 146  Q
    ||||||||||||||| | ||||||||||| ||||||   |  |||| ||||| |||| ||||| ||||||  |||| ||||||||||| | || ||| ||    
T  27961254 ttttaatccaaaatagaggagtattataaaaatttcttatgatttt-gggacgtttgaaatgtattctatatttgattcatgtaattcca-ttcttcccg 27961157  T
Q  147 aaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaatcggcaaag 206  Q
    ||||| |||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  27961156 aaacatagcaattctagggtgttttgatgtaattcacgaagaaatcatgcaaatcggcaaag 27961095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 10822235 - 10822110
Alignment:
Q  91 ttttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaaga 186  Q
    ||||||||||||||||||||||||||||  ||  || ||||||||||| |||| |   ||||| |||||||||||| ||||| ||||||||| | |||||    
T  10822235 ttttcgggacatttgtaatgttttctatatttttgttatgtaattctaatttt-cttaaaacatagcaattctagggtgttttgatgtaatt-acgaaga 10822138  T
Q  187 aatcacgcaaatcggcaaagcaaaacat 214  Q
    ||||| ||||||||||||||||| ||||    
T  10822137 aatcatgcaaatcggcaaagcaagacat 10822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 21079825 - 21079944
Alignment:
Q  97 ggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaaatcac 192  Q
    ||||||||| |||||||||  |||||||||| |||||||||| | |||| ||| ||| || |||| || |||| |||||||||||| ||||||||||||     
T  21079825 ggacatttgcaatgttttctatatttgagtc-tgtaattctattatttc-cgatacatagaaattttatggtgttttgatgtaattcaagaagaaatcat 21079922  T
Q  193 gcaaatcggcaaagcaaaacat 214  Q
    ||||||||||||||||| ||||    
T  21079923 gcaaatcggcaaagcaagacat 21079944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 9387558 - 9387505
Alignment:
Q  90 gttttcgggacatttgtaatgttttctat-ttgagtcatgtaattctagttttt 142  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  9387558 gttttcgggacatttgtaatgttttctatattgagtcatgtaattatggttttt 9387505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 14723680 - 14723567
Alignment:
Q  94 tcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta--ggtgtttgatgtaatttaagaagaaat 189  Q
    ||||||| ||||||||||||||  |||||||||| |||||||||||||||||  |||||| ||||||| ||  ||| ||||| |||||| | ||||||||    
T  14723680 tcgggacttttgtaatgttttctatatttgagtc-tgtaattctagtttttc-tgaaacatagcaattttaggggtttttgaagtaattcacgaagaaat 14723583  T
Q  190 cacgcaaatcggcaaa 205  Q
    || ||||||| |||||    
T  14723582 catgcaaatcagcaaa 14723567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 23005345 - 23005461
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||| ||||| | |||||||||||||  ||| |   ||||| || ||| | |||||    
T  23005345 tttcgggacatttgtaatgttttccatatttgagt-atgtaattctag-ttttcccaaaacaaagcaatttgagggggattttgaagttattcacgaaga 23005442  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  23005443 aatcatgcaaatcggcaaa 23005461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 23783021 - 23782905
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaaga 186  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||| ||||| | |||||||||||||  ||| |   ||||| || ||| | |||||    
T  23783021 tttcgggacatttgtaatgttttccatatttgagt-atgtaattctag-ttttcccaaaacaaagcaatttgagggggattttgaagttattcacgaaga 23782924  T
Q  187 aatcacgcaaatcggcaaa 205  Q
    ||||| |||||||||||||    
T  23782923 aatcatgcaaatcggcaaa 23782905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 9507369 - 9507494
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaaga 186  Q
    |||||||||||||||||| ||||||||  |||||| ||||||||||| || ||| ||| ||| ||||||| ||||   | |||||||||||| | |||||    
T  9507369 tttcgggacatttgtaatattttctatatttgagt-atgtaattcta-ttattcccgagacatagcaattatagggtgtttttgatgtaattcacgaaga 9507466  T
Q  187 aatcacgcaaatcggcaaagcaaaacat 214  Q
    |||||   ||||||||||| ||||||||    
T  9507467 aatcataaaaatcggcaaatcaaaacat 9507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 20404187 - 20404233
Alignment:
Q  167 tttgatgtaatttaagaagaaatcacgcaaatcggcaaagcaaaaca 213  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||    
T  20404187 tttgatgtaattcacgaagaaatcatgcaaatcggcaaagcaaaaca 20404233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 8038155 - 8038271
Alignment:
Q  98 gacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaagaaatcac 192  Q
    ||||||| |||||||||||||  ||||||| || ||||||||| || | | ||||| ||||||| ||||   | ||||| |||||||| ||||||||||     
T  8038155 gacatttataatgttttctatatttgagtc-tgcaattctagtcttcc-caaaacatagcaattttagggtgtttttgaagtaatttacgaagaaatcat 8038252  T
Q  193 gcaaatcggcaaagcaaaa 211  Q
    |||||||||||||||||||    
T  8038253 gcaaatcggcaaagcaaaa 8038271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 9339081 - 9339201
Alignment:
Q  96 gggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg--tttgatgtaatttaagaagaaatca 191  Q
    |||||||||||||||||||||||  ||||||  |||||||||| | |||| ||||||| ||||||| ||||    |||||||||||| | ||||||||||    
T  9339081 gggacatttgtaatgttttctatatttgagtt-tgtaattctattctttc-cgaaacatagcaattttagggtattttgatgtaattcatgaagaaatca 9339178  T
Q  192 cgcaaatcggcaaagcaaaacat 214  Q
      |||||| ||||||||| ||||    
T  9339179 ttcaaatctgcaaagcaagacat 9339201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 18171352 - 18171467
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta--ggtgtttgatgtaatttaagaagaa 187  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||| ||| ||||| |||||||||||||||  |  || |||| |  ||||| | ||||||    
T  18171352 tttcgggacttttgtaatgttttctatatttgagtc-tgtaattgtag-ttttcccgaaacaaagcaatttgaggggggttttaattaattcatgaagaa 18171449  T
Q  188 atcacgcaaatcggcaaa 205  Q
    |||| |||||||||||||    
T  18171450 atcatgcaaatcggcaaa 18171467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 11136916 - 11136800
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaa-ttctagtttttcgcgaaacaaagcaattctaggt---gtttgatgtaatttaagaag 185  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||| |||||||||||  ||||| ||||||||| |||||    ||||| |||||| | |||     
T  11136916 tttcgagacttttgtaatgttttctatatttgagtc-tgtaaattctagttttttacgaaaaaaagcaattttaggttgcttttgaagtaattcatgaat 11136818  T
Q  186 aaatcacgcaaatcggca 203  Q
    |||||| |||||||||||    
T  11136817 aaatcatgcaaatcggca 11136800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 28904066 - 28904186
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaa 187  Q
    ||||||||||||||||||||||||  |||||||||||||||||| || ||||||  |||||| ||||||| || | || |||||||||||| | ||| ||    
T  28904066 tttcgggacatttgtaatgttttctatatttgagtcatgtaattata-tttttcctgaaacatagcaattatatgatgttttgatgtaattcacgaacaa 28904164  T
Q  188 atcacgcaaatcggcaaagcaa 209  Q
    |||| |||||||||||||||||    
T  28904165 atcatgcaaatcggcaaagcaa 28904186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 17649789 - 17649673
Alignment:
Q  102 tttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgcaaat 198  Q
    |||||||| |||||||| |||||||||| || |||| |||| | ||||||| | |||||||||| ||||| ||||||||||| |||||||||| ||||||    
T  17649789 tttgtaatattttctatattgagtcatggaactctactttt-ctcgaaacatatcaattctaggatgttttgatgtaatttacgaagaaatcatgcaaat 17649691  T
Q  199 cggcaaagcaaaacattt 216  Q
    |||||||| |||| ||||    
T  17649690 cggcaaagtaaaatattt 17649673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 35861561 - 35861685
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaa 187  Q
    |||||||| ||| ||||||||||||||  || ||||||||||||||| |||||| | ||||| |||||| ||||| ||||| ||||||||| |  |||||    
T  35861561 tttcgggatattcgtaatgttttctatatttaagtcatgtaattctactttttc-caaaacatagcaat-ctagggtgttttgatgtaattcacaaagaa 35861658  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    |||| ||||||||||||| ||||||||    
T  35861659 atcatgcaaatcggcaaaacaaaacat 35861685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 30832930 - 30832821
Alignment:
Q  99 acatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtg---tttgatgtaatttaagaagaaatcacg 193  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||||| ||||||| ||||||| |||| |   ||||| |||||| | |||||||||| |    
T  30832930 acatttgtaatgttttctatgtttgagtt-tgtaattctagtttttc-cgaaacatagcaattttaggaggtttttgaagtaattcacgaagaaatcatg 30832833  T
Q  194 caaatcggcaaa 205  Q
    ||||||||||||    
T  30832832 caaatcggcaaa 30832821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 15176531 - 15176646
Alignment:
Q  92 tttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctaggtgttt--gatgtaatttaagaagaa 187  Q
    ||||||||| ||||| |||||||||||  ||||||| ||||||||||||||| | | ||||| ||||||| |||| ||||  || |||||| | ||||||    
T  15176531 tttcgggacttttgttatgttttctatatttgagtc-tgtaattctagttttcc-caaaacatagcaattttaggggtttttgaagtaattcacgaagaa 15176628  T
Q  188 atcacgcaaatcggcaaa 205  Q
    |||| |||||||||||||    
T  15176629 atcatgcaaatcggcaaa 15176646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 24851050 - 24851163
Alignment:
Q  99 acatttgtaatgttttcta--tttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacgc 194  Q
    |||||||||||||||||||  |||||||||| |||||||| || ||| | ||||| ||||||| |||| ||||| ||||||||| |  || |||||| ||    
T  24851050 acatttgtaatgttttctacatttgagtcatataattcta-ttcttcccaaaacatagcaattttaggatgttttgatgtaattcacaaataaatcatgc 24851148  T
Q  195 aaatcggcaaagcaa 209  Q
    |||||||||||||||    
T  24851149 aaatcggcaaagcaa 24851163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 17976222 - 17976184
Alignment:
Q  98 gacatttgtaatgttttctatttgagtcatgtaattcta 136  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17976222 gacatttgtaatgttttctaattgagtcatgtaattcta 17976184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 15557388 - 15557341
Alignment:
Q  91 ttttcgggacatttgtaatgttttcta--tttgagtcatgtaattcta 136  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  15557388 ttttcgggacatttgtaaggttttctatgtttgagtcatgtaattcta 15557341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 24381426 - 24381545
Alignment:
Q  93 ttcgggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaagaa 187  Q
    ||||| || |||||| ||||||||||  ||||||| |||||||||| || ||| || |||| ||||||| ||||   | |||||||||||| | ||||||    
T  24381426 ttcggtacttttgtattgttttctatatttgagtc-tgtaattcta-ttattcccgtaacatagcaattttagggtgtttttgatgtaattcacgaagaa 24381523  T
Q  188 atcacgcaaatcggcaaagcaa 209  Q
    |||| |||||||||||||||||    
T  24381524 atcatgcaaatcggcaaagcaa 24381545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 24090977 - 24091092
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta--ggtgtttgatgtaatttaagaagaa 187  Q
    |||||||||  |||||||||||||  |||||||||| ||||||||||| ||||| | ||||| ||||||| ||  || |||||| |||||| | ||||||    
T  24090977 tttcgggactcttgtaatgttttctatatttgagtc-tgtaattctag-ttttctcaaaacatagcaattttaggggggtttgaagtaattcacgaagaa 24091074  T
Q  188 atcacgcaaatcggcaaa 205  Q
    |||| |||||| ||||||    
T  24091075 atcatgcaaattggcaaa 24091092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 17980787 - 17980666
Alignment:
Q  96 gggacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg---tgtttgatgtaatttaagaagaaatc 190  Q
    |||||||||| ||||||||||||  ||||||  |||| ||||| || ||| ||||||| ||||||||||||   | |||||||||||| | ||| |||||    
T  17980787 gggacatttgcaatgttttctatatttgagtt-tgtagttcta-ttcttcacgaaacatagcaattctaggatgtttttgatgtaattcacgaaaaaatc 17980690  T
Q  191 acgcaaatcggcaaagcaaaacat 214  Q
    | ||||||||||||| ||| ||||    
T  17980689 atgcaaatcggcaaatcaagacat 17980666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 19784883 - 19785000
Alignment:
Q  96 gggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaagaaatc 190  Q
    |||| |||||||||||||||  ||||||||| |||||||||| ||| |||  |||| | ||||||| |||   || |||||||||||| | |||||||||    
T  19784883 gggatatttgtaatgttttctatatttgagt-atgtaattct-gttcttcctgaaatatagcaattttagggtgtttttgatgtaattcacgaagaaatc 19784980  T
Q  191 acgcaaatcggcaaagcaaa 210  Q
    | |||||||| |||||||||    
T  19784981 atgcaaatcgacaaagcaaa 19785000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 17510902 - 17510854
Alignment:
Q  92 tttcgggacatttgtaatgttttctatttgagtcatgtaattctagtttt 141  Q
    |||||| || ||| |||||||||||||||||||| |||||||||||||||    
T  17510902 tttcggaacttttataatgttttctatttgagtc-tgtaattctagtttt 17510854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 18836792 - 18836748
Alignment:
Q  90 gttttcgggacatttgtaatgttttctat-ttgagtcatgtaatt 133  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  18836792 gttttcaggacatttgtaatgtttactatattgagtcatgtaatt 18836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 38283 - 38164
Alignment:
Q  98 gacatttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatcacg 193  Q
    |||||||||||||||||||||  |||||||||||||||||  |||||| ||||||| | ||||| |||| ||||| ||||||||| | ||||||||||||    
T  38283 gacatttgtaatgttttctatatttgagtcatgtaattctc-tttttcccgaaacataacaattttagggtgttttgatgtaattcacgaagaaatcacg 38185  T
Q  194 caaatcggcaaagcaaaacat 214  Q
    |||||||| ||| ||| ||||    
T  38184 caaatcggaaaaacaagacat 38164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 23991 - 23872
Alignment:
Q  101 atttgtaatgttttctat-ttgagtcatgtaattctagtttttcgcgaaacaaagcaattct-aggtgttt-gatgtaatttaagaagaaatcacgcaaa 197  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||||  |||||| | |||||||| ||||||||| ||||| |||||| | | |    
T  23991 atttgtaatgttttctatattgagtcatgtaattcaagtttttctcgaaacatggcaattataaggtgtttcgatgtaattcaagaataaatcatgtaca 23892  T
Q  198 tcggcaaagcaaaacatttt 217  Q
    | |||| | |||||||||||    
T  23891 tgggcacaacaaaacatttt 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 12090 - 11966
Alignment:
Q  92 tttcgggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattcta-ggtg-tttgatgtaatttaagaagaa 187  Q
    ||||||||||||| ||||||||||  |||||||||| |||||||||| || ||| | ||||| |||||||||| |||| |||||| ||||||| ||||||    
T  12090 tttcgggacatttataatgttttctatatttgagtc-tgtaattcta-ttcttcccaaaacatagcaattctagggtgttttgatttaatttacgaagaa 11993  T
Q  188 atcacgcaaatcggcaaagcaaaacat 214  Q
    ||||  |||||| ||||||||| ||||    
T  11992 atcatacaaatcagcaaagcaagacat 11966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 12896 - 13012
Alignment:
Q  96 gggacatttgtaatgttttc--tatttgagtcatgtaattctagtttttcgcgaaacaaagcaattctagg-tgttt-gatgtaatttaagaagaaatca 191  Q
    |||| ||||||||||||||   |||||||||||||| |||||| |||| |  |||||| |||||||||||| ||||| ||||||||| |  |||||||||    
T  12896 gggatatttgtaatgtttttcatatttgagtcatgttattctacttttcct-gaaacatagcaattctaggatgttttgatgtaattcacaaagaaatca 12994  T
Q  192 cgcaaatcggcaaagcaa 209  Q
     |||||||| ||||||||    
T  12995 agcaaatcgacaaagcaa 13012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 63991 - 64097
Alignment:
Q  36 catttttatttagttttaatccaaaataaatgagtattataacaatttcccgtagttttcgggacatttg-taatgttttctatttgagtcatgtaattc 134  Q
    ||||||||||||||||| ||||||| || | |||| ||| |||||||  |  | ||||| |||||||||  ||||||||||| || |||||||||| |||    
T  63991 catttttatttagttttgatccaaattagaggagttttagaacaattgtctttggtttttgggacattttataatgttttcttttcgagtcatgtatttc 64090  T
Q  135 tagtttt 141  Q
    |||||||    
T  64091 tagtttt 64097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 243938 - 244049
Alignment:
Q  101 atttgtaatgttttctat--ttgagtcatgtaattctagtttttcgcgaaacaaagcaattctag---gtgtttgatgtaatttaagaagaaatcacgca 195  Q
    ||||||||||||||||||  |||| | ||||||||||| || ||| ||||||| ||||||| |||   || |||||||||||| |  ||||||||| |||    
T  243938 atttgtaatgttttctatatttgaat-atgtaattcta-ttcttcccgaaacatagcaattttagtgtgtttttgatgtaattcacaaagaaatcatgca 244035  T
Q  196 aatcggcaaagcaa 209  Q
    ||||| ||||||||    
T  244036 aatcgtcaaagcaa 244049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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