View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_406 (Length: 242)
Name: NF9288A_low_406
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_406 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 27969679 - 27969866
Alignment:
| Q |
20 |
gcttaaactttggttgatattttcaagttttattaggcaaatgaggtggattaactacaaaaacgcaatagctaatcaacttttgtatacaaaatagtaa |
119 |
Q |
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| T |
27969679 |
gcttaaactttggttgatattttcaagttttattaggcaaatgcggtggattaactacaaaaactcaatagctaatcaacttttgtatacaaaatagtaa |
27969778 |
T |
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| Q |
120 |
catactttgcatgctacaagaaacataaactggtaacatttatttcatgctactaatgataatcgcaagtgttataaataaatataga |
207 |
Q |
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| T |
27969779 |
catactttgcatgctacaagaaacataaagtggtaacatttatttcatgctactaatgataatcgcaagtgttataaataaatataga |
27969866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 36068529 - 36068667
Alignment:
| Q |
24 |
aaactttggttgatattttcaagttttattaggcaaatgaggtggattaactacaaaaacgca-atagctaatcaactttt--------gtatacaaaat |
114 |
Q |
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| T |
36068529 |
aaactttggttgatattttgaagttttaataggccaatgcggtgaattaacaacaaaaattcttatatctaatcaactttttttataatgtatacaaaat |
36068628 |
T |
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| Q |
115 |
agtaacatactttgcatgctacaagaaacataaactggt |
153 |
Q |
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| T |
36068629 |
agtaacatattttgcatgctacaagaaacataaagtggt |
36068667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 27556750 - 27556840
Alignment:
| Q |
105 |
tatacaaaatagtaacatactttgcatgctacaagaaacataaa--ctggtaacatttatttcatgctactaatgataatcgcaagtgtta |
193 |
Q |
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| T |
27556750 |
tatacaaaatagtaacatattttgcatgttacaagaaacataaagtgtggtaacatttatttcatggtacatataataaactcaagtgtta |
27556840 |
T |
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