View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_410 (Length: 241)

Name: NF9288A_low_410
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_410
NF9288A_low_410
[»] chr8 (3 HSPs)
chr8 (127-220)||(3058394-3058487)
chr8 (127-220)||(3062695-3062788)
chr8 (127-218)||(26082911-26083002)
[»] chr6 (2 HSPs)
chr6 (127-220)||(6667972-6668065)
chr6 (21-132)||(5337575-5337687)
[»] chr4 (2 HSPs)
chr4 (127-220)||(17439412-17439505)
chr4 (127-220)||(17443714-17443807)
[»] chr1 (3 HSPs)
chr1 (127-220)||(4873036-4873129)
chr1 (127-220)||(4877336-4877429)
chr1 (127-220)||(30189956-30190049)
[»] chr3 (1 HSPs)
chr3 (127-175)||(28010300-28010348)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 3058394 - 3058487
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058394 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 3058487  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 3062695 - 3062788
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062695 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 3062788  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 26083002 - 26082911
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083002 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc 26082911  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 6668065 - 6667972
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668065 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 6667972  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 5337687 - 5337575
Alignment:
Q  21 gcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaag-nnnnnnngttacagta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  5337687 gcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagttacagta 5337588  T
Q  120 aataagctgaagt 132  Q
    |||||||||||||    
T  5337587 aataagctgaagt 5337575  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 17439505 - 17439412
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439505 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 17439412  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 17443807 - 17443714
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443807 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 17443714  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 4873036 - 4873129
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873036 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 4873129  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 4877336 - 4877429
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877336 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 4877429  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 30189956 - 30190049
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30189956 tgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 30190049  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 28010348 - 28010300
Alignment:
Q  127 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgttt 175  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||    
T  28010348 tgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt 28010300  T

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