View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_413 (Length: 240)

Name: NF9288A_low_413
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_413
NF9288A_low_413
[»] chr3 (13 HSPs)
chr3 (7-239)||(3303146-3303378)
chr3 (16-239)||(3321433-3321656)
chr3 (16-239)||(3309834-3310057)
chr3 (7-192)||(3201637-3201822)
chr3 (41-239)||(3220672-3220870)
chr3 (16-234)||(3356572-3356790)
chr3 (13-234)||(3722244-3722464)
chr3 (29-190)||(3197618-3197779)
chr3 (43-188)||(2837852-2837997)
chr3 (58-190)||(2808023-2808155)
chr3 (58-188)||(2855062-2855192)
chr3 (94-190)||(2798153-2798249)
chr3 (44-186)||(2769811-2769953)
[»] scaffold0691 (1 HSPs)
scaffold0691 (58-190)||(5402-5534)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 3303378 - 3303146
Alignment:
Q  7 aatcagagaatggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgca 106  Q
    |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3303378 aatctgagagtggagttagagcgcaatgtgcacttgactagtctgataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgca 3303279  T
Q  107 tgctctattttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaag 206  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||     
T  3303278 tgctatattttggtatatatcctgaggactactccatcaaacggaagagacttactcggcaatggatggcagaagggtttgttaagaaggaggggacaaa 3303179  T
Q  207 accattggaggaagttgctgaagagtacctgac 239  Q
    || ||||||||||||||||||||||||||||||    
T  3303178 actattggaggaagttgctgaagagtacctgac 3303146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 3321656 - 3321433
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||| |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3321656 atggagttagagcacaatgtgcacttgaatagtctaacaaagattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctatatt 3321557  T
Q  116 ttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaagaccattgga 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  3321556 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaagggtttgttaagaatgaggagataagaccattgga 3321457  T
Q  216 ggaagttgctgaagagtacctgac 239  Q
    ||||||||| ||||||||||||||    
T  3321456 ggaagttgcagaagagtacctgac 3321433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 3310057 - 3309834
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||| ||| ||||| ||||||||||||| ||  |||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||    
T  3310057 atggagttagagcacaacgtgcatttgactagtctaacaaagattttatctcttagttatgatgatttgcctcaccacttgaaatcttgcatgctgtatt 3309958  T
Q  116 ttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaagaccattgga 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||| | | |||||||    
T  3309957 ttggtatatatcctgaggactacaccatcaatcggaagagacttactcggcaatggatggctgaagggtttgttatgaatgaggagactaaatcattgga 3309858  T
Q  216 ggaagttgctgaagagtacctgac 239  Q
    ||||||||||||||||||||||||    
T  3309857 ggaagttgctgaagagtacctgac 3309834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 3201637 - 3201822
Alignment:
Q  7 aatcagagaatggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgca 106  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||| ||||||||||||  |||||||||||||||||    
T  3201637 aatctgagaatggagttagagcgcaatgtgcatttgacaagtctaataaagattttatctctaagttacgatgatttgcctagccatttgaaatcatgca 3201736  T
Q  107 tgctctattttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttagg 192  Q
    |||| ||||||||||||||||| ||||||||| |||||| |  || |||||||||||||||||||||||| |||||||||||||||    
T  3201737 tgctgtattttggtatatatcccgaggactacaccatcactacgaagagacttactcggcaatggatggctgaagggtttgttagg 3201822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 3220870 - 3220672
Alignment:
Q  41 tgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactc 140  Q
    ||||| ||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||      
T  3220870 tgactggtctaatgaggatattatcccttagttatgatgatttgccttaccatttgaaatcatgtatgttatattttggtatatatcctgaggactacgt 3220771  T
Q  141 catcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaagaccattggaggaagttgctgaagagtacctgac 239  Q
    |||||| ||||  ||| ||||||||||||||||||| ||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||| ||||    
T  3220770 catcaaacggaaaagaattactcggcaatggatggctgaagggtttgttaagaatgagcacacaagaccattggaggaagttgcggaagagtacatgac 3220672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 3356790 - 3356572
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||| ||||||| |||||| | || |    
T  3356790 atggagttagagcgcaatgtgcacttgactagtataataaggattttaagtcttagttatgatgatttgccttaccatctgaaatcctgcatgttatact 3356691  T
Q  116 ttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaagaccattgga 215  Q
    |||| || ||||| |||||||||  ||| || || |  ||||||||| ||||||||||||| ||||||||||||| |||||||   ||||||||||| ||    
T  3356690 ttggcatgtatccagaggactacatcattaaacgaaaaagacttactaggcaatggatggctgaagggtttgttaagaatgagcacacaagaccattcga 3356591  T
Q  216 ggaagttgctgaagagtac 234  Q
    |||||||||||||||||||    
T  3356590 ggaagttgctgaagagtac 3356572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 3722244 - 3722464
Alignment:
Q  13 agaatggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctct 112  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| | |    
T  3722244 agaatggagttagagcgcaatgtgcatttgactagtataataaggattttatgtcttagttatgatgatttgccttaccatctgaaatcatgcatgttat 3722343  T
Q  113 attttggtatatatcctga-ggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgttaggaatgaggtgacaagaccat 211  Q
    | ||||| || |||||||| |||||||  |||||| || |  ||| ||||| ||||||    ||| ||||||||||||| |||||||   ||||||||||    
T  3722344 actttggcatgtatcctgagggactacatcatcaaacgaaaaagaattactaggcaat--ccggctgaagggtttgttaagaatgagcacacaagaccat 3722441  T
Q  212 tggaggaagttgctgaagagtac 234  Q
    | |||||||||||||||||||||    
T  3722442 tcgaggaagttgctgaagagtac 3722464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 3197779 - 3197618
Alignment:
Q  29 gcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcc 128  Q
    |||||||||| || ||| |||||| ||  ||||||||||  |||||||| ||| | ||||  ||||| |||  ||||||| | ||||||||||| |||||    
T  3197779 gcaatgtgcatttcactcgtctaacaatgattttatctcggagttatgaggatcttccttgtcatttaaaactatgcatgttgtattttggtatctatcc 3197680  T
Q  129 tgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgtta 190  Q
     ||| || || |||||||| | | |||||||||| |||||||||| || ||||| |||||||    
T  3197679 ggagaaccacaccatcaattgtaagagacttactaggcaatggatagccgaaggatttgtta 3197618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 2837997 - 2837852
Alignment:
Q  43 actagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactcca 142  Q
    |||||||||| ||  ||||||||||| ||||||||     |||| ||| |||| ||| |||||||  | ||||||||||||||||| ||||| |||||||    
T  2837997 actagtctaacaaagattttatctctcagttatgacagcctgccgtactatttaaaaccatgcattttgtattttggtatatatccagaggattactcca 2837898  T
Q  143 tcaatcggacgagacttactcggcaatggatggcagaagggtttgt 188  Q
    | ||||  | |||||| ||| |||||||||| || || ||||||||    
T  2837897 ttaatcataggagactaactaggcaatggatagctgaggggtttgt 2837852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 2808023 - 2808155
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggacgagac 157  Q
    |||||||| || ||||| ||||  ||||| ||| | |||||| | |||||  | ||||||||||||||||| ||||||||||| || ||||  | ||||     
T  2808023 attttatcactgagttacgatggcttgccctactacttgaaaccctgcattttgtattttggtatatatccagaggactactctattaatcataagagat 2808122  T
Q  158 ttactcggcaatggatggcagaagggtttgtta 190  Q
    | ||||| |||||||| || |||||||||||||    
T  2808123 taactcgacaatggatagctgaagggtttgtta 2808155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 2855192 - 2855062
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggacgagac 157  Q
    ||||||||||| ||||||||     |||| ||| |||| ||| |||||||  | ||||||||||||||||| ||||| |||||||| ||||  | |||||    
T  2855192 attttatctctcagttatgacagcctgccgtactatttaaaaccatgcattttgtattttggtatatatccagaggattactccattaatcataggagac 2855093  T
Q  158 ttactcggcaatggatggcagaagggtttgt 188  Q
    | ||| |||||||||| || || ||||||||    
T  2855092 taactaggcaatggatagctgaggggtttgt 2855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 2798153 - 2798249
Alignment:
Q  94 ttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggacgagacttactcggcaatggatggcagaagggtttgtta 190  Q
    |||||| |||||||  | ||||||| |||||||||| ||||||| || |||||||  | |||| | ||||| |||||||| || |||||||||||||    
T  2798153 ttgaaaccatgcattttgtattttgctatatatcctcaggactattctatcaatcataagagattaactcgacaatggatagctgaagggtttgtta 2798249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 2769811 - 2769953
Alignment:
Q  44 ctagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccat 143  Q
    ||||||||| ||  ||||| ||||||||||||||||   | |||||| | |||||| |||||||  | |||||||||||||||||| | ||||| || ||    
T  2769811 ctagtctaacaaagattttgtctcttagttatgatggccttccttactacttgaaaccatgcattttgtattttggtatatatcctcaagactattctat 2769910  T
Q  144 caatcggacgagacttactcggcaatggatggcagaagggttt 186  Q
     |||   | |||| | || ||||||||||| || |||||||||    
T  2769911 taataataagagattaacacggcaatggatagctgaagggttt 2769953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 5534 - 5402
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggacgagac 157  Q
    ||||| || |||||||||||||   |||||||| | |||||| |||||||  | ||||||||||||||||| |||||||| || || ||||  | ||||     
T  5534 attttgtcacttagttatgatggcctgccttactacttgaaaccatgcattttgtattttggtatatatccagaggactattctattaatcataagagat 5435  T
Q  158 ttactcggcaatggatggcagaagggtttgtta 190  Q
    | ||||| |||||||| || |||||||||||||    
T  5434 taactcgtcaatggatagctgaagggtttgtta 5402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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