View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_414 (Length: 240)
Name: NF9288A_low_414
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_414 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 30841480 - 30841247
Alignment:
| Q |
1 |
aagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaatggatgagctcacacctggagagaagattgttgtgtaacaagcgtgag |
100 |
Q |
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| T |
30841480 |
aagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaacaaccgtgag |
30841381 |
T |
|
| Q |
101 |
ttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaacctannnnnn |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |
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| T |
30841380 |
ttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacctatttttt |
30841281 |
T |
|
| Q |
200 |
naaggttttgggtaaagatgtgatgtccatctca |
233 |
Q |
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||||||||||||||||||| | |||||| |||| |
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| T |
30841280 |
taaggttttgggtaaagatgcggtgtccaactca |
30841247 |
T |
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