View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_415 (Length: 240)
Name: NF9288A_low_415
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_415 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17701142 - 17700923
Alignment:
| Q |
1 |
gaataatggcggcaccttgaagaagactacaaaaattggttgtgtttt--cttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaac |
98 |
Q |
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| T |
17701142 |
gaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---ggaaaccgaagaac |
17701046 |
T |
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| Q |
99 |
catacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatta |
198 |
Q |
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| T |
17701045 |
catacatgtgatgtttgtaacaaggtatttttatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatta |
17700946 |
T |
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| Q |
199 |
ttcactcaccgactgcccaatct |
221 |
Q |
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| T |
17700945 |
ttcactcaccgactgcccaatct |
17700923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17662937 - 17663156
Alignment:
| Q |
1 |
gaataatggcggcaccttgaagaagactacaaaaattggttgtgtttt--cttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaac |
98 |
Q |
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| T |
17662937 |
gaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---ggaaaccgaagaac |
17663033 |
T |
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| Q |
99 |
catacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatta |
198 |
Q |
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| T |
17663034 |
catacaagtgatgtttgtcacaaggtattttcatccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaaggatactatta |
17663133 |
T |
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| Q |
199 |
ttcactcaccgactgcccaatct |
221 |
Q |
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||| ||||| |||||||| |||| |
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| T |
17663134 |
ttccctcactgactgccccatct |
17663156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 21900122 - 21899949
Alignment:
| Q |
45 |
ttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatgctt |
144 |
Q |
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| T |
21900122 |
ttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatgctt |
21900026 |
T |
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| Q |
145 |
tgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
221 |
Q |
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| T |
21900025 |
tgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccccatct |
21899949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
103 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
163 |
Q |
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| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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