View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_416 (Length: 240)
Name: NF9288A_low_416
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_416 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 49086584 - 49086372
Alignment:
| Q |
18 |
agaagggacaatggaaggaaggagacgtggcttagatcgagtcgtctcaccgacatttggataaacttatagacttataaaaccaacagtttctgcattc |
117 |
Q |
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| T |
49086584 |
agaagggacaatggaatgaaggagacgtggcttagatcgggtcgtttcaccgacatttggataaacttatagacttataaaaccaacagtttctgcatgc |
49086485 |
T |
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| Q |
118 |
aatgaaaattggtttgctcactattgattatgtgtgtttagtatagttctacacatgtttggttctcatgcttcgacagatcccacaacacgtcacattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49086484 |
aatgaaaattggtttgctcactattgattatgtgtgtttagtatagttctacacatgtttggttctcatgcttcgccagatcccacaacacgtcacattc |
49086385 |
T |
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| Q |
218 |
aatttttacacca |
230 |
Q |
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||||||||||||| |
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| T |
49086384 |
aatttttacacca |
49086372 |
T |
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