View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_417 (Length: 240)
Name: NF9288A_low_417
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_417 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 54793816 - 54793601
Alignment:
| Q |
14 |
agcatagctgcttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
|
| Q |
114 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
|
| Q |
214 |
tcaaggtctcccattc |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
54793616 |
tcaaggtctcccattc |
54793601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 52286484 - 52286282
Alignment:
| Q |
27 |
caaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgc |
126 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
52286484 |
caaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgc |
52286385 |
T |
|
| Q |
127 |
caaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctccca |
226 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| |||||||||||||| |
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| T |
52286384 |
caaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgatcaaggtctccca |
52286285 |
T |
|
| Q |
227 |
ttc |
229 |
Q |
| |
|
||| |
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|
| T |
52286284 |
ttc |
52286282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
14 |
agcatagctgcttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
114 |
cacattctcc |
123 |
Q |
| |
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||||| |||| |
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| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 801647 - 801450
Alignment:
| Q |
27 |
caaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgc |
126 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||| |
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| T |
801647 |
caaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcacattttcctgc |
801548 |
T |
|
| Q |
127 |
caaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctccca |
226 |
Q |
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|| | |||||||||||| | |||||| ||||||||||| || |||| |||||||||||||||| | | |||||||||||||| ||||||||||||| |
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| T |
801547 |
cataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaaggtctccca |
801451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 54775950 - 54775980
Alignment:
| Q |
199 |
acaaaaaccttctcatcaaggtctcccattc |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattc |
54775980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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