View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_422 (Length: 239)
Name: NF9288A_low_422
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_422 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 6315857 - 6315648
Alignment:
| Q |
24 |
gtaacattatagtacaagatgcttgtgtgttgtgaccaatactgtaatcttttttgtcattggtatggttgtgatcataatgtaatgacaattcttcctt |
123 |
Q |
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| T |
6315857 |
gtaacattatagtacaagatgcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctt |
6315758 |
T |
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| Q |
124 |
tgcaaaagataacaatctaatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttattt |
223 |
Q |
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| T |
6315757 |
tgcaaaagataacaatctaatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttattt |
6315658 |
T |
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| Q |
224 |
aaagtaacaa |
233 |
Q |
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|||||||||| |
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| T |
6315657 |
aaagtaacaa |
6315648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 51819747 - 51819641
Alignment:
| Q |
73 |
ttttttgtcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataa---caatctaatgacagttctagtatggaagtggtgg |
169 |
Q |
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|||||| ||| ||||| |||||| ||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||| ||||||||| |
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| T |
51819747 |
ttttttatcaatggtacggttgttatcataatgtaatgacaattcctcctttgaaaaatataatactaatctaaatacagttctagcatgaaagtggtgg |
51819648 |
T |
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| Q |
170 |
atattca |
176 |
Q |
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||||||| |
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| T |
51819647 |
atattca |
51819641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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