View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_426 (Length: 238)
Name: NF9288A_low_426
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_426 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 29020096 - 29020249
Alignment:
| Q |
29 |
aatgaaattctaaaagaaataatcaaaatgttatcccatcaaaatgacaaaataaagttcaaacagtaagcaaaatgataacccattaaaatcaagttct |
128 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
29020096 |
aatgaagttctaaaagaaataatcaaaatgttatccaatcaaaatgacaaaatgaagttcaaacagtaagcaaaatgacaaccgattaaaatcgagttct |
29020195 |
T |
|
| Q |
129 |
aaattgaatcaaaatc---atgcttccacatctacgtttccctcatcttcactt |
179 |
Q |
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| T |
29020196 |
aagattaatcaaaatcatgatgcttccacgtctatgtttgcctcatcttcactt |
29020249 |
T |
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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 16623091 - 16623222
Alignment:
| Q |
48 |
taatcaaaatgttatcccatcaaaatgacaaaataaagttcaaacagtaagcaaaatgataacccattaaaatcaagttctaaattgaatcaaaatcatg |
147 |
Q |
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||||||||||| ||||| ||||| ||||||| |||||| || ||||| |||||||| || | ||||||||||||||||||| ||||||||||||| |
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| T |
16623091 |
taatcaaaatgacatccctccaaaacaacaaaatcaagttctaaaagtaaacaaaatgacaagcaattaaaatcaagttctaaaactaatcaaaatcatg |
16623190 |
T |
|
| Q |
148 |
cttccacatctacgtttccctcatcttcactt |
179 |
Q |
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| T |
16623191 |
cttctgcatctgcgtcttcctcatcttcactt |
16623222 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 16190021 - 16190102
Alignment:
| Q |
48 |
taatcaaaatgttatcccatcaaaatgacaaaataaagttcaaacagtaagcaaaatgataacccattaaaatcaagttcta |
129 |
Q |
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| T |
16190021 |
taatcataatgacatctcatcaaaatgacaaaatcaagttctaaaagtaaacaaaatgataagccattaaaatgaagttcta |
16190102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 17990402 - 17990366
Alignment:
| Q |
189 |
tcttgttcatcacttgattcaaacccttgttcttcca |
225 |
Q |
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| T |
17990402 |
tcttgttcatcacttgattcaaactattgttcttcca |
17990366 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 19189768 - 19189663
Alignment:
| Q |
71 |
aatgacaaaataaagttcaaacagtaagcaaaatgataacccattaaaatcaagttctaaattgaatcaaaatcatgcttccacatctacgtttccctca |
170 |
Q |
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||||||||||| |||| | || || || |||||||| || |||||||||||||||||||| |||||||||||||||||| ||||| || | ||||| |
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| T |
19189768 |
aatgacaaaatcaagtcctaaaagcaaacaaaatgacaaatcattaaaatcaagttctaaaagtaatcaaaatcatgcttccgcatctgcggctgcctca |
19189669 |
T |
|
| Q |
171 |
tcttca |
176 |
Q |
| |
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|||||| |
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|
| T |
19189668 |
tcttca |
19189663 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 17692847 - 17692957
Alignment:
| Q |
69 |
aaaatgacaaaataaagttcaaacagtaagcaaaatgataacccattaaaatcaagttctaaattgaatcaaaatcatgcttccacatctacgtttccct |
168 |
Q |
| |
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||||||||||||| ||||| || | ||| |||||||| || |||| ||||| ||||| |||| |||||||||||||||||| | |||| || ||| |
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| T |
17692847 |
aaaatgacaaaatccagttctaaaattaaacaaaatgacaagccatcaaaataaagttttaaaagtaatcaaaatcatgcttccgcgtctatgtcggcct |
17692946 |
T |
|
| Q |
169 |
catcttcactt |
179 |
Q |
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||||||||||| |
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| T |
17692947 |
catcttcactt |
17692957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 797671 - 797714
Alignment:
| Q |
189 |
tcttgttcatcacttgattcaaacccttgttcttccaactccaa |
232 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
797671 |
tcttgttcatcacttgattcaaactattgttcttccacctccaa |
797714 |
T |
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