View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_433 (Length: 235)
Name: NF9288A_low_433
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_433 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 3429300 - 3429497
Alignment:
| Q |
20 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3429300 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
3429399 |
T |
|
| Q |
120 |
atgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtggggataggcctcattttgtct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3429400 |
atgggattggagtgtgccataaggagggagtaatagttgcgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtct |
3429497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 3425822 - 3426018
Alignment:
| Q |
21 |
catcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagata |
120 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | |||||||||||| |||| ||||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
3425822 |
catcttggttgtcccttgagagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctataatagcagctagtcctccaaagagata |
3425921 |
T |
|
| Q |
121 |
tgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtggggataggcctcattttgtct |
217 |
Q |
| |
|
||| ||||||||||||||||||||| ||| ||||||||| |||||| |||| |||||||||||||||| | ||||||| ||| ||||||||||||| |
|
|
| T |
3425922 |
tggcattggagtgtgccataaggagtgaggaatagttgttggggtgatgttagggtgtgtgtttagcaatttggtgggtatactcctcattttgtct |
3426018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University