View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_435 (Length: 235)
Name: NF9288A_low_435
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_435 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31425556 - 31425360
Alignment:
| Q |
1 |
aaaaatcaaaaggttactttagaaaaccacgaaaataatattacgtacttcatgagaaaaaactaaattgttagtttgtcacaaaaataaataaattgga |
100 |
Q |
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| T |
31425556 |
aaaaatcaaaaggttactttagaaaaccacgaaaataatattaggtacttcatgagaaaaaactaaattgttagtttgtcgcaaaaataaataaattgga |
31425457 |
T |
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| Q |
101 |
accaaaacccaaccacaaattattgttgattaagtatcagacgatatggtatcaacatcattaactatgaaagaatgcgacattaacgtgcaataaa |
197 |
Q |
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| T |
31425456 |
accaaaacccaaccacaaattattgttgattaagtatcagacgatatggtatcaacatcattaactatgaaagaatgcgacattaacgtgcaataaa |
31425360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 31425295 - 31425252
Alignment:
| Q |
192 |
aataaaaagaaaataaaactcgaattggttcatttctgtcgaca |
235 |
Q |
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| T |
31425295 |
aatagaaagaaaataaaactcgaattggtccatttgtgtcgaca |
31425252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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