View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_438 (Length: 234)
Name: NF9288A_low_438
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_438 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 35450052 - 35449825
Alignment:
| Q |
7 |
tttggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagt |
106 |
Q |
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| T |
35450052 |
tttggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagt |
35449953 |
T |
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| Q |
107 |
caattccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggagcattttgttgttgatggaacactagcttttccaagagaagtct |
206 |
Q |
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| T |
35449952 |
caattccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggatcattttgttgttgatggaaaactagcttttccaagagaagtct |
35449853 |
T |
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| Q |
207 |
ttcacatttttcttgtgcttcatctctt |
234 |
Q |
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| T |
35449852 |
ttgacatttttcttgtgcttcatctctt |
35449825 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 21010633 - 21010696
Alignment:
| Q |
171 |
ttgttgatggaacactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctt |
234 |
Q |
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|||||| ||||| | || |||||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctt |
21010696 |
T |
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