View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_444 (Length: 233)
Name: NF9288A_low_444
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_444 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 20302385 - 20302181
Alignment:
| Q |
5 |
caaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaacttgatcaattaacattgtccgac |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20302385 |
caaaatcatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacttgatcaattaatattgtccgac |
20302286 |
T |
|
| Q |
105 |
acagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaatacaatgaca |
204 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
20302285 |
acaaacatggttgggattcagcag----------catatctgatacaaacataatgaaataacatgagtgactcgactagaatcatgaaatacaatgtca |
20302196 |
T |
|
| Q |
205 |
ccttcctaatgaaga |
219 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
20302195 |
ccttcctaataaaga |
20302181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 20300967 - 20300928
Alignment:
| Q |
180 |
actagaatcatgaaatacaatgacaccttcctaatgaaga |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20300967 |
actagcatcatgaaatacaatgacaccttcctaatgaaga |
20300928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 30746466 - 30746661
Alignment:
| Q |
5 |
caaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaac-----ttgatcaattaacattgt |
99 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
30746466 |
caaaatcatcaccttttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgatcaat-aacattgt |
30746564 |
T |
|
| Q |
100 |
ccgacacagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaata |
196 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30746565 |
ccgacacaaacatggctgtgattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaaata |
30746661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 30680229 - 30680034
Alignment:
| Q |
5 |
caaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaac-----ttgatcaattaacattgt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
30680229 |
caaaatcatcacctcttatagtttctgtggttcagctgaagtatcctcttgctttcagcaaaagcagtggacacaacacaacttgatcaat-aacattgt |
30680131 |
T |
|
| Q |
100 |
ccgacacagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaata |
196 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30680130 |
ccgacacaaacatggctgcgattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaaata |
30680034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 30056998 - 30057193
Alignment:
| Q |
5 |
caaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaac-----ttgatcaattaacattgt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
30056998 |
caaaatcatcacctcttatagtttctgtggtttagctgaagcatcctcttgctttcaggaaaaacagtggacacaacacaacttgatcaat-aacattgt |
30057096 |
T |
|
| Q |
100 |
ccgacacagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaata |
196 |
Q |
| |
|
||||||| |||||| || |||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30057097 |
tcgacacaaacatggctgcgatttagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaaata |
30057193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 30433200 - 30433365
Alignment:
| Q |
49 |
cctcttgctttaaggaaaagcagtggacacaacttgatcaattaacattgtccgacacagacatggttgggattcagcagcattccataacatatctgtc |
148 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
30433200 |
cctcttgctttcaggagaagcagtggacacaacttgatcaattaacattgtccaacacaaacatggttgggattcagcagcattccacaacatatctgac |
30433299 |
T |
|
| Q |
149 |
acaaacaaaatgaaataacatgagtgattcgactag-aatcatgaaatacaatgacaccttcctaa |
213 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| || |||||||||||||||||| |||||| |
|
|
| T |
30433300 |
acaaacataatgaaataacatgagtgtctcgactagaaaaaatgaaatacaatgacaccatcctaa |
30433365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 30716407 - 30716212
Alignment:
| Q |
5 |
caaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaac-----ttgatcaattaacattgt |
99 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| || ||||| |
|
|
| T |
30716407 |
caaaatcatcacctcttatagattctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgataaataaa-attgt |
30716309 |
T |
|
| Q |
100 |
ccgacacagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaata |
196 |
Q |
| |
|
|||||||| |||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30716308 |
ccgacacaaacatggctgcaagtcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaaata |
30716212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 30480723 - 30480844
Alignment:
| Q |
98 |
gtccgacacagacatggttgggattcagcagcattccataacatatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaatac |
197 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
30480723 |
gtccgacacaaatatggttgggattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaattac |
30480822 |
T |
|
| Q |
198 |
aatgacaccttcctaatgaaga |
219 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
30480823 |
aatgtcaccttcctaataaaga |
30480844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 30204061 - 30204241
Alignment:
| Q |
48 |
tcctcttgctttaaggaaaagcagtggacacaacttgatcaattaacattgtccgacacagacatggttgggattcagcagca---------ttccataa |
138 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||| | || || |||||||||||||| ||||| || |
|
|
| T |
30204061 |
tcctcttgctttcagaaaaagcagtggacataacttgatcaattaacattgtttgacacaaaaatagtcgggattcagcagcattccggacgttccacaa |
30204160 |
T |
|
| Q |
139 |
catatctgtcacaaacaaaatgaaataacatgagtgattcgactagaatcatgaaatacaatgacaccttcctaatgaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||| || |||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
30204161 |
catatctgacacaaacataataaaataacatgagcgactcgactagaatcatgaaataaaactacacattcctaatgaaga |
30204241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30480656 - 30480723
Alignment:
| Q |
7 |
aaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtgg |
74 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30480656 |
aaattatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtgg |
30480723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 30397080 - 30397162
Alignment:
| Q |
61 |
aggaaaagcagtggacacaacttgatcaattaacattgtccgacacagacatggttgggattcagcagcattccataacatat |
143 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||||||| |||||| || || ||||||||||||||||||| ||||||| |
|
|
| T |
30397080 |
aggaaaagcagtggatgcaacttggttaattaacattgtctgacacaaacgaagtcgggattcagcagcattccacaacatat |
30397162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 30245580 - 30245542
Alignment:
| Q |
180 |
actagaatcatgaaatacaatgacaccttcctaatgaaga |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30245580 |
actagaatcatgaa-tacaatgacaccttcctaatgaaga |
30245542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 40660716 - 40660758
Alignment:
| Q |
132 |
tccataacatatctgtcacaaacaaaatgaaataacatgagtg |
174 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
40660716 |
tccacaacatatctgacacaaacataatgaaataacatgagtg |
40660758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University