View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_449 (Length: 232)
Name: NF9288A_low_449
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_449 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34691247 - 34691016
Alignment:
| Q |
1 |
aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg |
100 |
Q |
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| T |
34691247 |
aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg |
34691148 |
T |
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| Q |
101 |
ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaacaataat |
200 |
Q |
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| T |
34691147 |
ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat |
34691048 |
T |
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| Q |
201 |
aagatcgaggtatcatgctctatgacagtaag |
232 |
Q |
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| T |
34691047 |
aagatcgaggtctcatgctctatgacagtaag |
34691016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26989172 - 26988941
Alignment:
| Q |
1 |
aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26989172 |
aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg |
26989073 |
T |
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| Q |
101 |
ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaacaataat |
200 |
Q |
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| T |
26989072 |
ttgcaaactttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat |
26988973 |
T |
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| Q |
201 |
aagatcgaggtatcatgctctatgacagtaag |
232 |
Q |
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| T |
26988972 |
aagatcgaggtctcatgctctatgacagtaag |
26988941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 27076251 - 27076319
Alignment:
| Q |
137 |
gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaacaataataagat |
205 |
Q |
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| T |
27076251 |
gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatgaaaaaaataataagat |
27076319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
| Q |
105 |
aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa |
185 |
Q |
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| T |
27028237 |
aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa |
27028148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
| Q |
97 |
cttgttgtaagctttccaaaagcatttaacagacacaactg |
137 |
Q |
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| T |
27076180 |
cttgttgcaagctttccaaaagcatttaacaaacacaactg |
27076220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 27076108 - 27076156
Alignment:
| Q |
6 |
aatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattc |
54 |
Q |
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| T |
27076108 |
aatgatatatgtcttttagcaaccaaataacatgaacaactgtttattc |
27076156 |
T |
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