View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_452 (Length: 231)

Name: NF9288A_low_452
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_452
NF9288A_low_452
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-213)||(144975-145169)
[»] chr6 (3 HSPs)
chr6 (19-207)||(22803997-22804185)
chr6 (33-207)||(21626994-21627165)
chr6 (59-97)||(18379919-18379957)
[»] chr7 (11 HSPs)
chr7 (19-198)||(9707876-9708055)
chr7 (33-95)||(333536-333598)
chr7 (31-109)||(14125154-14125231)
chr7 (31-109)||(14428550-14428627)
chr7 (32-88)||(16555145-16555201)
chr7 (32-88)||(16610461-16610517)
chr7 (31-101)||(22576101-22576171)
chr7 (41-98)||(13136164-13136221)
chr7 (29-88)||(4427069-4427128)
chr7 (33-96)||(13650752-13650815)
chr7 (33-98)||(13030269-13030334)
[»] chr4 (6 HSPs)
chr4 (19-198)||(13574143-13574322)
chr4 (43-97)||(19619216-19619270)
chr4 (33-98)||(13001648-13001713)
chr4 (41-98)||(15141234-15141291)
chr4 (29-73)||(15473232-15473276)
chr4 (47-95)||(19607850-19607898)
[»] chr1 (5 HSPs)
chr1 (19-213)||(22462750-22462944)
chr1 (29-88)||(21133056-21133115)
chr1 (23-85)||(36135933-36135995)
chr1 (29-73)||(21206359-21206403)
chr1 (29-73)||(21214403-21214447)
[»] chr5 (1 HSPs)
chr5 (20-211)||(26744402-26744593)
[»] chr3 (7 HSPs)
chr3 (42-202)||(18139619-18139779)
chr3 (41-97)||(16656848-16656904)
chr3 (29-88)||(15660857-15660916)
chr3 (29-88)||(23759239-23759298)
chr3 (43-97)||(17255815-17255869)
chr3 (32-88)||(13133395-13133451)
chr3 (29-65)||(22142805-22142841)
[»] chr8 (6 HSPs)
chr8 (31-142)||(16190252-16190360)
chr8 (43-97)||(20380514-20380568)
chr8 (33-101)||(18682294-18682362)
chr8 (33-101)||(18719570-18719638)
chr8 (33-101)||(18727856-18727924)
chr8 (33-87)||(17261338-17261392)
[»] chr2 (4 HSPs)
chr2 (29-88)||(28709845-28709904)
chr2 (31-97)||(18939831-18939897)
chr2 (35-98)||(23236802-23236865)
chr2 (59-93)||(24378987-24379021)
[»] scaffold0227 (1 HSPs)
scaffold0227 (63-213)||(25857-26007)
[»] scaffold0334 (1 HSPs)
scaffold0334 (41-97)||(11474-11530)
[»] scaffold0177 (1 HSPs)
scaffold0177 (29-88)||(18403-18462)
[»] scaffold0084 (1 HSPs)
scaffold0084 (34-97)||(40231-40294)
[»] scaffold0080 (1 HSPs)
scaffold0080 (41-104)||(22755-22818)
[»] scaffold0056 (1 HSPs)
scaffold0056 (29-88)||(32765-32824)
[»] scaffold0015 (1 HSPs)
scaffold0015 (29-88)||(164288-164346)
[»] scaffold0011 (1 HSPs)
scaffold0011 (29-88)||(133333-133392)
[»] scaffold0066 (1 HSPs)
scaffold0066 (59-97)||(58963-59001)
[»] scaffold0789 (1 HSPs)
scaffold0789 (41-98)||(5303-5360)
[»] scaffold0435 (1 HSPs)
scaffold0435 (41-98)||(1186-1243)
[»] scaffold1078 (1 HSPs)
scaffold1078 (29-73)||(2430-2474)
[»] scaffold0422 (1 HSPs)
scaffold0422 (41-88)||(13703-13750)
[»] scaffold0497 (1 HSPs)
scaffold0497 (29-87)||(8395-8453)
[»] scaffold0414 (1 HSPs)
scaffold0414 (29-87)||(5148-5206)
[»] scaffold0175 (1 HSPs)
scaffold0175 (59-101)||(9599-9641)
[»] scaffold0085 (1 HSPs)
scaffold0085 (30-84)||(55863-55917)
[»] scaffold0032 (1 HSPs)
scaffold0032 (63-99)||(1984-2020)
[»] scaffold0004 (1 HSPs)
scaffold0004 (41-97)||(29010-29065)


Alignment Details
Target: scaffold0007 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 145169 - 144975
Alignment:
Q  19 atcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaat 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  145169 atcatccaacccacaaaaagcctctgaggtagcttcagaagaagttactttagaaaacccccaacaacaatcaccaaactcacaaacagcccaaacaaat 145070  T
Q  119 atctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcctgaaaccatcag 213  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  145069 atctttgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctaaacaacctacatcaccctctattcctgaaaccgtcag 144975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 22804185 - 22803997
Alignment:
Q  19 atcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaat 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  22804185 atcatccaacccacaaaaagcctctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaaatcacaaatagcccaaacaaat 22804086  T
Q  119 atctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcctgaaac 207  Q
    ||| || |  |||||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||||| |  |||| ||||||||    
T  22804085 atcactacacctgaacaagttgttcctgaaccatctgcttctgaacaaattgattctgatcaacctacatcatcagctatccctgaaac 22803997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 21627165 - 21626994
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaatatctctgcctctga 132  Q
    ||||||| ||| | ||||||||||| |||||| ||||||||||||| ||||||||| |||||||| ||| ||  |||    |||  | ||||| | ||||    
T  21627165 aaaaagcctctaaagtagcttcagatgaagttgctttagaaagcccacaacaacaaacaccaaacacacaaatggcc---tcaatgacctctgtccctga 21627069  T
Q  133 acaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcctgaaac 207  Q
    ||| |||||| | ||| | |||| | |||| |||| || |||| ||||| |||||||||||||||||| ||||||    
T  21627068 acatgttgtttcagaatcttctgttgctgaacaacatgcttctgaacaaactacatcaccctctattcttgaaac 21626994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 18379957 - 18379919
Alignment:
Q  59 gaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  18379957 gaagttactttagaaagcccccaacaacaagcaccaaac 18379919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 9707876 - 9708055
Alignment:
Q  19 atcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaat 118  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||| |||||||||||    
T  9707876 atcatccaacccacaaaaatcccctgaggtagcttcagaagaagttgctttagaaagccccaaacaacaatcaccaaaatcacaaacaacccaaacaaat 9707975  T
Q  119 atctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctat 198  Q
    ||| || |  |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||    
T  9707976 atcactacacctgaacaagttgttcctgaaccatctgcttttgaacaacttgattctgaacaacctacatcatcctctat 9708055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 333598 - 333536
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaa 95  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  333598 aaaaagcctctgaggtagcttctgatgaagttactttagaaagcccccaacaccaatcaccaa 333536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 14125231 - 14125154
Alignment:
Q  31 acaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcc 109  Q
    ||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| || ||||||||| |||||||    
T  14125231 acaaaaagcctctgaagtagcttcagaagaagttatttcagaaagcccccaacaacaa-caacaaactcacaaacagcc 14125154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 14428627 - 14428550
Alignment:
Q  31 acaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcc 109  Q
    ||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| || ||||||||| |||||||    
T  14428627 acaaaaagcctctgaagtagcttcagaagaagttatttcagaaagcccccaacaacaa-caacaaactcacaaacagcc 14428550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 16555145 - 16555201
Alignment:
Q  32 caaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    |||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||    
T  16555145 caaaaagcctctgaagtagcttcagaagaagttatttcagaaagcccccaacaacaa 16555201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 16610517 - 16610461
Alignment:
Q  32 caaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    |||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||    
T  16610517 caaaaagcctctgaagtagcttcagaagaagttatttcagaaagcccccaacaacaa 16610461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 22576101 - 22576171
Alignment:
Q  31 acaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcac 101  Q
    ||||| ||| ||||| |||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  22576101 acaaagagcctctgaagtagcttctgatgaagttgctttagaaaacccccaacaacaagcaccaaactcac 22576171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 13136164 - 13136221
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||| |||||||| ||  ||||||||||||||||||||||||||||| |||||||||    
T  13136164 tctgaagtagcttctgattaagttactttagaaagcccccaacaacaagcaccaaact 13136221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 4427069 - 4427128
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||  |||||||||||||    
T  4427069 ccacaaaaagactctgaggtagcttcagcagaagttacttcagaagacccccaacaacaa 4427128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 13650815 - 13650752
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaa 96  Q
    ||||||| ||| | |||||| | || |||||||||||||||||||||||||||||| |||||||    
T  13650815 aaaaagcctctaaagtagctcctgatgaagttactttagaaagcccccaacaacaagcaccaaa 13650752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 13030269 - 13030334
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||||| ||||| ||||||||    |||||||||||||||| ||||||||||||| |||||||||    
T  13030269 aaaaagcctctgaagtagcttctagtgaagttactttagaaaacccccaacaacaagcaccaaact 13030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 13574143 - 13574322
Alignment:
Q  19 atcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaat 118  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||| |||||||||||    
T  13574143 atcatccaacccacaaaaatcccctgaggtagcttcagaagaagttgctttagaaagccccaaacaacaatcaccaaaatcacaaacaacccaaacaaat 13574242  T
Q  119 atctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctat 198  Q
    ||| || |  |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||    
T  13574243 atcactacacctgaacaagttgttcctgaaccatctgcttttgaacaacttgattctgaacaacctacatcatcctctat 13574322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 19619216 - 19619270
Alignment:
Q  43 tgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||| || |||||||||||||||||||||||||| ||| ||||||||    
T  19619216 tgaggtagcttctgatgaagttactttagaaagcccccaacagcaagcaccaaac 19619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 13001648 - 13001713
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||||| ||||| |||| ||| || |||||||||||||||||||||||||||||  |||||||||    
T  13001648 aaaaagcctctgaagtagattctgatgaagttactttagaaagcccccaacaacatgcaccaaact 13001713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 15141291 - 15141234
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||| |||||||| |  |||||||||||||||||||||||||||||| |||||||||    
T  15141291 tctgaagtagcttctggtgaagttactttagaaagcccccaacaacaagcaccaaact 15141234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15473232 - 15473276
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaa 73  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||    
T  15473232 ccacaaaaagcctttgaggtagcttcagaagaagttacttcagaa 15473276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 19607850 - 19607898
Alignment:
Q  47 gtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaa 95  Q
    |||||||| || ||||||||||||| |||||||||||||| | ||||||    
T  19607850 gtagcttctgatgaagttactttagcaagcccccaacaaccagcaccaa 19607898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 22462750 - 22462944
Alignment:
Q  19 atcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaat 118  Q
    ||||||||||||||| ||||  | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  22462750 atcatccaacccacagaaagactatgaagtagcttcagaagaagttattttagaaagcccccaacaacaatcaccaaaatcacaaacaacccaaacaaat 22462849  T
Q  119 atctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcctgaaaccatcag 213  Q
    ||| ||||| ||||||||||||||||| ||   ||||||||||| |||||||||| | |||||||| ||||||| || |||||||||||||||||    
T  22462850 atccctgcccctgaacaagttgttcctaaagagtctgcttctgaacaacttgattatgaacaacctccatcaccttcaattcctgaaaccatcag 22462944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 21133056 - 21133115
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||| ||| ||| |||||||||||||||||||||||| ||||  ||| |||||||||    
T  21133056 ccacaaagagcctctaaggtagcttcagaagaagttacttcagaagacccacaacaacaa 21133115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 36135995 - 36135933
Alignment:
Q  23 tccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaa 85  Q
    |||||| || ||| ||| ||| |||||||||| |  |||||||||||||||||||||||||||    
T  36135995 tccaactcagaaagagcctctaaggtagcttctggtgaagttactttagaaagcccccaacaa 36135933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 21206359 - 21206403
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaa 73  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  21206359 ccacaaagagcctctgagttagcttcagaagaagttacttcagaa 21206403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 21214403 - 21214447
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaa 73  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  21214403 ccacaaagagcctctgagttagcttcagaagaagttacttcagaa 21214447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 26744593 - 26744402
Alignment:
Q  20 tcatccaacccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaata 119  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||| || |||||| |  ||||||||||||||| |    
T  26744593 tcatccaacccacaaaaagcctctaaggtagcttcagaagaagttatttcagaaagcccccaacaacaaacaacaaacttagaaacagcccaaacaaaca 26744494  T
Q  120 tctctgcctctgaacaagttgttcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcctgaaaccatc 211  Q
    |  || | |||| |||| |||||||||||| |  |||| |||| ||||| | |||| |||||||| |||||||||| |||||||||||||||    
T  26744493 ttcctacatctgcacaaattgttcctgaacaagttgctcctgaacaactggtttctgaacaacctccatcaccctccattcctgaaaccatc 26744402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 18139619 - 18139779
Alignment:
Q  42 ctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaatatctctgcctctgaacaagttgt 141  Q
    ||||||||||||| |  ||||||||||||||||| | |||||||||| ||||||| |||| ||  |||||| || ||||||||||| |||||||||||||    
T  18139619 ctgaggtagcttctggtgaagttactttagaaagtctccaacaacaaacaccaaaatcacaaatggcccaatcagatatctctgcccctgaacaagttgt 18139718  T
Q  142 tcctgaaccatctgcttctgagcaacttgattctcaacaacctacatcaccctctattcct 202  Q
    |||||||||||||| | |||| ||||||| |||| ||||| || |||| || |||||||||    
T  18139719 tcctgaaccatctgttcctgaacaacttgcttctaaacaaactccatccccttctattcct 18139779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 16656848 - 16656904
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||||  || |||||||||||||||||||||||||||||| ||||||||    
T  16656848 tctgaggtagcttatgatgaagttactttagaaagcccccaacaacaagcaccaaac 16656904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 15660857 - 15660916
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||||||| ||||| |||| |||||||||||  |||| ||||| |||||||||||||    
T  15660857 ccacaaaaagcctctgaagtagtttcagaagaagccacttcagaaaacccccaacaacaa 15660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 23759298 - 23759239
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||||||||||||| |||| |||||||| |  ||||| ||||| |||||||||||||    
T  23759298 ccacaaaaagcttctgaagtagtttcagaagcaactacttcagaaaccccccaacaacaa 23759239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 17255815 - 17255869
Alignment:
Q  43 tgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||| |  |||||||||||| ||| ||||||||||||| ||||||||    
T  17255815 tgaggtagcttctggcgaagttactttataaatcccccaacaacaaccaccaaac 17255869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 13133451 - 13133395
Alignment:
Q  32 caaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    |||||||||||||| ||||||||| ||||||| |||| ||||  |||||||| ||||    
T  13133451 caaaaagcttctgaagtagcttcaaaagaagtcacttcagaagacccccaaccacaa 13133395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 22142841 - 22142805
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagtta 65  Q
    |||||||||||| |||| |||||||||||||||||||    
T  22142841 ccacaaaaagctcctgaagtagcttcagaagaagtta 22142805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 16190360 - 16190252
Alignment:
Q  31 acaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaatatctctgcctct 130  Q
    ||||| ||| ||||| |||||||| || |||||| ||||||||||||||||||||||| ||||||||||||  |  ||||   |||||| ||||||||||    
T  16190360 acaaagagcctctgaagtagcttctgatgaagttgctttagaaagcccccaacaacaagcaccaaactcacagatggccc---caaatacctctgcctct 16190264  T
Q  131 gaacaagttgtt 142  Q
    ||||| ||||||    
T  16190263 gaacatgttgtt 16190252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 20380514 - 20380568
Alignment:
Q  43 tgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||||    
T  20380514 tgaggtagcttctgatgaagttactttagaaagcccccaacaacaagcaccaaac 20380568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 18682294 - 18682362
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcac 101  Q
    ||||||| ||||| |||||||| || | |||||||||||||||| | ||||||||| ||||||||||||    
T  18682294 aaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcac 18682362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 18719570 - 18719638
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcac 101  Q
    ||||||| ||||| |||||||| || | |||||||||||||||| | ||||||||| ||||||||||||    
T  18719570 aaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcac 18719638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 18727856 - 18727924
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcac 101  Q
    ||||||| ||||| |||||||| || | |||||||||||||||| | ||||||||| ||||||||||||    
T  18727856 aaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcac 18727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 17261392 - 17261338
Alignment:
Q  33 aaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaaca 87  Q
    ||||||| | |||||||||||| || ||| || ||||||||||||||||||||||    
T  17261392 aaaaagcctatgaggtagcttctgatgaatttgctttagaaagcccccaacaaca 17261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 28709845 - 28709904
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  28709845 ccacaaaaagcctctgaagtagcttcagaagaagttacttcagaaagtccccaacaacaa 28709904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 18939897 - 18939831
Alignment:
Q  31 acaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  18939897 acaaaaatcctctgaagtagcttcagatgaagttgctttagaaagcccccaacaacaaacaccaaac 18939831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 23236865 - 23236802
Alignment:
Q  35 aaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||| ||||| |||||||| || |||||||| ||||||||||||||||| ||| ||| |||||    
T  23236865 aaagcctctgaagtagcttctgatgaagttaccttagaaagcccccaacatcaagcacgaaact 23236802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 24379021 - 24378987
Alignment:
Q  59 gaagttactttagaaagcccccaacaacaatcacc 93  Q
    |||||||||||||||||||||||||||||| ||||    
T  24379021 gaagttactttagaaagcccccaacaacaagcacc 24378987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 26007 - 25857
Alignment:
Q  63 ttactttagaaagcccccaacaacaatcaccaaactcacgaacagcccaaacaaatatctctgcctctgaacaagttgttcctgaaccatctgcttctga 162  Q
    |||||||||||||||| ||||||||| |||| ||| ||  ||   || ||| ||||||| || |  |||||||||||||||||||||    |||| ||||    
T  26007 ttactttagaaagccctcaacaacaaacacctaacacataaatgaccaaaaaaaatatcactacacctgaacaagttgttcctgaacaggttgctcctga 25908  T
Q  163 gcaacttgattctcaacaacctacatcaccctctattcctgaaaccatcag 213  Q
     ||||||| |||| ||||| || |||  || ||||||||||||||||||||    
T  25907 acaacttgcttctgaacaaactccattcccttctattcctgaaaccatcag 25857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 11530 - 11474
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||  |||||||    
T  11530 tctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaac 11474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 18403 - 18462
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||  |||||| ||||||    
T  18403 ccacagaaagcctctgaggtagcttcagaagaagttacttcagaagacccccatcaacaa 18462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 40294 - 40231
Alignment:
Q  34 aaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||| ||||| |||||||| |  |||||||||||||||||| ||||||||||||| ||||||    
T  40294 aaaagcctctgaagtagcttctggtgaagttactttagaaagctcccaacaacaatcgccaaac 40231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 22818 - 22755
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaactcacgaa 104  Q
    ||||| |||||||| || ||||||||||||||||||||||| |||||| || ||||| ||||||    
T  22818 tctgaagtagcttctgatgaagttactttagaaagcccccatcaacaagcatcaaacgcacgaa 22755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 32765 - 32824
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||| ||| |||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  32765 ccacaaagagcctctgaggtagtttcagaagaagttacttcagaagacccccaacaacaa 32824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 164288 - 164346
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||| ||| |||||||||||||||||||||||||||| || ||| ||||||||||||    
T  164288 ccacaaagagcctctgaggtagcttcagaagaagttacttcag-aagaccccaacaacaa 164346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 133333 - 133392
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||  ||||| |||||||    
T  133333 ccacaaaaagcctctgaagtagcttcagaagaagttactctagaagacccccgacaacaa 133392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 58963 - 59001
Alignment:
Q  59 gaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  58963 gaagttactttagaaagcccccaacaacaagcaccaaac 59001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 5360 - 5303
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||| |||||||| || | |||||||||||||||||||||||||||  |||||||||    
T  5360 tctgaagtagcttctgatgcagttactttagaaagcccccaacaacatgcaccaaact 5303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 1186 - 1243
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaact 98  Q
    ||||| |||||||| || |||| |||||||||||||||| |||||||| |||||||||    
T  1186 tctgaagtagcttctgatgaagatactttagaaagccccgaacaacaagcaccaaact 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 2430 - 2474
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaa 73  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||    
T  2430 ccacagaaagcctctgaggtagcttcagaagaagttacttcagaa 2474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 13750 - 13703
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 88  Q
    |||||||||||||||||||||||||||| ||||  |||||| ||||||    
T  13750 tctgaggtagcttcagaagaagttacttcagaagacccccaccaacaa 13703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 8395 - 8453
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaaca 87  Q
    ||||||||| | ||||| ||||||||||||||||| |||| ||||  ||||||||||||    
T  8395 ccacaaaaaacctctgaagtagcttcagaagaagtcacttcagaagacccccaacaaca 8453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 5148 - 5206
Alignment:
Q  29 ccacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaacaaca 87  Q
    |||||||||||  |||| ||||||||||||||||||| || ||||  ||||||||||||    
T  5148 ccacaaaaagcccctgaagtagcttcagaagaagttatttcagaagacccccaacaaca 5206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 9599 - 9641
Alignment:
Q  59 gaagttactttagaaagcccccaacaacaatcaccaaactcac 101  Q
    |||||||||||||||| |||||||||| || ||||||||||||    
T  9599 gaagttactttagaaatcccccaacaataagcaccaaactcac 9641  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 55917 - 55863
Alignment:
Q  30 cacaaaaagcttctgaggtagcttcagaagaagttactttagaaagcccccaaca 84  Q
    |||||||||| ||||| ||||||||||||| |  ||||||||||| |||||||||    
T  55917 cacaaaaagcctctgaagtagcttcagaagcaactactttagaaaccccccaaca 55863  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 1984 - 2020
Alignment:
Q  63 ttactttagaaagcccccaacaacaatcaccaaactc 99  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1984 ttactttagaaagccctcaacaacaagcaccaaactc 2020  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 29010 - 29065
Alignment:
Q  41 tctgaggtagcttcagaagaagttactttagaaagcccccaacaacaatcaccaaac 97  Q
    ||||||| |||||| || |||||  ||||||||||||||||||||||| ||||||||    
T  29010 tctgagggagcttctgatgaagtg-ctttagaaagcccccaacaacaagcaccaaac 29065  T

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