View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_454 (Length: 231)

Name: NF9288A_low_454
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_454
NF9288A_low_454
[»] chr1 (12 HSPs)
chr1 (11-197)||(16584864-16585050)
chr1 (11-143)||(25785805-25785937)
chr1 (11-189)||(8083994-8084173)
chr1 (11-173)||(1161433-1161594)
chr1 (11-142)||(11619973-11620104)
chr1 (39-197)||(42009997-42010155)
chr1 (11-195)||(18461120-18461295)
chr1 (69-189)||(512961-513081)
chr1 (105-198)||(32678514-32678607)
chr1 (107-189)||(8414674-8414756)
chr1 (14-152)||(11911629-11911768)
chr1 (107-174)||(27320560-27320627)
[»] chr8 (12 HSPs)
chr8 (11-207)||(17722420-17722606)
chr8 (11-197)||(35948827-35949013)
chr8 (11-197)||(7956340-7956516)
chr8 (11-197)||(44223327-44223503)
chr8 (66-197)||(9505015-9505147)
chr8 (39-144)||(3767684-3767789)
chr8 (39-197)||(16570890-16571047)
chr8 (66-197)||(32321799-32321930)
chr8 (39-189)||(34760834-34760975)
chr8 (145-197)||(9040427-9040479)
chr8 (22-96)||(9040513-9040587)
chr8 (112-148)||(8266063-8266099)
[»] chr4 (7 HSPs)
chr4 (18-197)||(23107918-23108097)
chr4 (11-194)||(4413456-4413640)
chr4 (11-198)||(24466315-24466502)
chr4 (11-175)||(28319290-28319454)
chr4 (66-189)||(53393210-53393333)
chr4 (66-194)||(8606187-8606315)
chr4 (108-197)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (21-198)||(16746550-16746727)
chr5 (25-197)||(31895896-31896068)
chr5 (11-194)||(19947711-19947894)
chr5 (11-138)||(16746421-16746548)
chr5 (107-175)||(1498290-1498358)
chr5 (46-189)||(29126091-29126234)
chr5 (149-187)||(41092125-41092163)
chr5 (106-166)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (11-198)||(580-767)
[»] chr7 (12 HSPs)
chr7 (11-197)||(7352370-7352555)
chr7 (11-198)||(39695086-39695268)
chr7 (11-136)||(46993309-46993434)
chr7 (14-144)||(7994998-7995128)
chr7 (11-142)||(11727328-11727449)
chr7 (69-197)||(48070614-48070742)
chr7 (66-197)||(3996997-3997128)
chr7 (63-165)||(46265355-46265457)
chr7 (25-165)||(2922986-2923125)
chr7 (106-189)||(12013026-12013109)
chr7 (133-189)||(12471855-12471911)
chr7 (133-185)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (11-197)||(46655514-46655701)
chr3 (66-194)||(44471020-44471148)
chr3 (22-198)||(11503337-11503513)
chr3 (66-198)||(30554594-30554726)
chr3 (100-189)||(46892612-46892701)
chr3 (101-189)||(23307117-23307205)
chr3 (132-195)||(12937849-12937912)
chr3 (66-161)||(27524053-27524148)
chr3 (66-152)||(44285605-44285691)
chr3 (112-197)||(26757593-26757678)
chr3 (66-142)||(779553-779629)
chr3 (97-197)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (18-197)||(31111413-31111592)
chr2 (11-144)||(4638207-4638340)
chr2 (18-195)||(13852276-13852453)
chr2 (63-197)||(29109214-29109348)
chr2 (13-185)||(3919857-3920029)
chr2 (78-197)||(12893980-12894099)
chr2 (11-78)||(36009278-36009345)
chr2 (66-152)||(37630375-37630461)
chr2 (66-189)||(5526225-5526347)
chr2 (111-198)||(30906942-30907029)
chr2 (22-144)||(38607020-38607141)
[»] scaffold0565 (1 HSPs)
scaffold0565 (11-137)||(1844-1970)
[»] chr6 (6 HSPs)
chr6 (66-194)||(7176534-7176662)
chr6 (66-167)||(23301441-23301542)
chr6 (107-197)||(11971456-11971546)
chr6 (70-167)||(23300455-23300552)
chr6 (40-142)||(7551423-7551525)
chr6 (66-187)||(9826747-9826868)
[»] scaffold0070 (1 HSPs)
scaffold0070 (107-197)||(33729-33819)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 16584864 - 16585050
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaacc 16584963  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584964 gaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 25785937 - 25785805
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  25785937 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaacc 25785838  T
Q  111 gaaccaaacaaggttggatattttttcggtttg 143  Q
    |||||||||||||| ||||||||||||||||||    
T  25785837 gaaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 8084173 - 8083994
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8084173 atcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacc 8084074  T
Q  111 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
     ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084073 aaaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 1161433 - 1161594
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| | | ||||||||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaacc 1161532  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 173  Q
    |||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161533 gaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 11620104 - 11619973
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||     
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaact 11620005  T
Q  111 gaaccaaacaaggttggatattttttcggttt 142  Q
    |||||||||||| | ||||||||||| |||||    
T  11620004 gaaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  39 gatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 138  Q
    |||||| |||| ||||| |||||| ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  139 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 18461295 - 18461120
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||| || | ||| | ||| |||||    
T  18461295 atcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaacc 18461196  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 195  Q
    |||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461195 gaactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 513081 - 512961
Alignment:
Q  69 caaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcat 168  Q
    |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| ||||||||||||||||| |||||  ||| | ||||||    
T  513081 caaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcggtttggttcgatttgggtttttgatttcat 512982  T
Q  169 tggttttattcgaaccactta 189  Q
      ||||| | |||||||||||    
T  512981 cagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  105 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  107 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 11911768 - 11911629
Alignment:
Q  14 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 113  Q
    ||||| ||||||||||||||   | ||| || |||| ||||| || || | ||| |||||||||||||||| | || |||||| | |||||  |||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  114 ccaaacaaggttggata-ttttttcggtttggttcggttt 152  Q
    ||||||||||| ||||| ||||||||  |||||| |||||    
T  11911668 ccaaacaaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  107 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 174  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 17722420 - 17722606
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722420 atcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 17722519  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttg 207  Q
    ||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  17722520 gaaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttg 17722606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 35949013 - 35948827
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| |||||  ||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  35949013 atcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaacc 35948914  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948913 gaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 7956340 - 7956516
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||| ||||||||||||||||||||||||||| ||||| || |||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacc 7956439  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
     ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956440 aaacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 44223327 - 44223503
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||| ||| ||||| ||||     
T  44223327 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaact 44223426  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223427 gaaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 9505147 - 9505015
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactttcggtt 164  Q
    |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||    
T  9505147 aaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattttcggtt 9505048  T
Q  165 tcattggttttattcgaaccacttaaaccccta 197  Q
    |||| |||||||| | ||||||||| |||||||    
T  9505047 tcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  39 gatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 138  Q
    |||||| |||||||||| |  || |||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  139 gtttgg 144  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  39 gatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 138  Q
    |||||| |||| |||||||  || || ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  139 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 32321930 - 32321799
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||||||||    
T  32321930 aaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggttttcggttt 32321831  T
Q  166 cattggttttattcgaaccacttaaaccccta 197  Q
    |||  ||||||| ||||||||||  |||||||    
T  32321830 catcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  39 gatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 138  Q
    |||||| |||| ||||| || || |||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  139 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  145 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  22 ggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcgg 96  Q
    ||||||||||||||  ||||||| |||| ||||| |  || ||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  112 aaccaaacaaggttggatattttttcggtttggttcg 148  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  18 gattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 117  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||  |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  118 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 4413640 - 4413456
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  4413640 atcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaacc 4413541  T
Q  111 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 194  Q
    |||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413540 gaaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 24466315 - 24466502
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  24466315 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 24466414  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466415 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 28319290 - 28319454
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||| ||||| |||||| | |||||  |||||||||| ||||| ||||| |||||||||| || |||| ||| |||| |||||||  |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaacc 28319389  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 175  Q
    ||||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319390 gaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 53393210 - 53393333
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||    
T  53393210 aaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggattttcggttt 53393309  T
Q  166 cattggttttattcgaaccactta 189  Q
    ||| |||||| | |||||||||||    
T  53393310 catcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 8606187 - 8606315
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| || ||||    
T  8606187 aaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactatcagttt 8606286  T
Q  166 cattggttttattcgaaccacttaaaccc 194  Q
    | | |||||| | ||||||||||| ||||    
T  8606287 cgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  108 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  21 tggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 120  Q
    |||||||||| |||||| ||||||||||| ||||| |||||  |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  121 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  25 tcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 124  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  125 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 19947894 - 19947711
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| |||| |||||| | ||||||| ||| |||| ||||||||||     
T  19947894 atcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaact 19947795  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 194  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947794 gaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 16746421 - 16746548
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| |||||  |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16746421 atcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaacc 16746520  T
Q  111 gaaccaaacaaggttggatattttttcg 138  Q
    ||||||||||||||||||||||||||||    
T  16746521 gaaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 1498290 - 1498358
Alignment:
Q  107 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 175  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||||||||||| ||||||    
T  1498290 aaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggattttcggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  46 aaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 145  Q
    |||||||||||   || |||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  146 tcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  149 gtttggactttcggtttcattggttttattcgaaccact 187  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  106 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 166  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 580 - 767
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  580 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 679  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  680 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 7352370 - 7352555
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  7352370 atcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaacc 7352468  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
     ||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352469 aaaccaaataaagtcggatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 39695268 - 39695086
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||| |||||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||| ||| ||||||||| |||| ||| |||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaacc 39695169  T
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695168 gaaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 46993434 - 46993309
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||  |||||||   |||||||||    
T  46993434 atcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaacc 46993335  T
Q  111 gaaccaaacaaggttggatatttttt 136  Q
    || ||||||||||| | |||||||||    
T  46993334 gacccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 7995128 - 7994998
Alignment:
Q  14 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 113  Q
    ||||||||||||||||||||||||  ||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| |||||||| | |||  |||||||    
T  7995128 atcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaa 7995029  T
Q  114 ccaaacaaggttggatattttttcggtttgg 144  Q
    |||||||||||   |||||||||| ||||||    
T  7995028 ccaaacaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 11727328 - 11727449
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||| |||||||| || ||||||||||| ||||| || || ||||||||||||||||||||||           |||||||||||||||    
T  11727328 atcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaacc 11727417  T
Q  111 gaaccaaacaaggttggatattttttcggttt 142  Q
    ||||||||||||||   |||||||||||||||    
T  11727418 gaaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 48070742 - 48070614
Alignment:
Q  69 caaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcat 168  Q
    |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| ||||| ||||||||| || ||||||||| ||    
T  48070742 caaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttggtttagttcggtttagattttcggtttgat 48070643  T
Q  169 tggttttattcgaaccacttaaaccccta 197  Q
     | |||| | ||||||||||| |||||||    
T  48070642 cgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 3996997 - 3997128
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||||||||    
T  3996997 aaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggactttcggttt 3997096  T
Q  166 cattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||| | ||||||||||| |||||||    
T  3997097 cattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 46265355 - 46265457
Alignment:
Q  63 ccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcgg 162  Q
    ||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||||    
T  46265355 ccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttcgg 46265454  T
Q  163 ttt 165  Q
    |||    
T  46265455 ttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  25 tcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 124  Q
    |||||||||||   |||||| |||| |||||||| || || || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  125 tggatattttttcggtttggttcggtttggactttcggttt 165  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  106 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  133 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  133 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 185  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 46655701 - 46655514
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||||| |||| |||||||| |||||||||||    
T  46655701 atcattggattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaacc 46655602  T
Q  111 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||  ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655601 gaaccaagtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 44471148 - 44471020
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  ||||||||||||||||||||||| ||||| |||    
T  44471148 aaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggttcggtttggattttcgattt 44471049  T
Q  166 cattggttttattcgaaccacttaaaccc 194  Q
    ||| |||||| | ||||||||||| ||||    
T  44471048 catcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  22 ggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 121  Q
    |||| |||||||||   |||||| |||| |||||||  || ||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  122 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 30554594 - 30554726
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| | ||| |||||| |||||||||    
T  30554594 aaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagctcgatttggattttcggttt 30554693  T
Q  166 cattggttttattcgaaccacttaaacccctat 198  Q
    ||| | |||| ||||||||| ||| ||||||||    
T  30554694 catcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  100 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  101 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 189  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  132 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 195  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 27524148 - 27524053
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcg 161  Q
    |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||||    
T  27524148 aaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggactttcg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 152  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 26757678 - 26757593
Alignment:
Q  112 aaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||| || | ||| ||||||| ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757678 aaccaaacaacgtcgaatactttttcgattttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 779553 - 779629
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 142  Q
    ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779553 aaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  97 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 196  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  197 a 197  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31111592 - 31111413
Alignment:
Q  18 gattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 117  Q
    |||||||| ||||||||||  |||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| |||| |||  |||||||||||||||||    
T  31111592 gattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaa 31111493  T
Q  118 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111492 acaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 4638340 - 4638207
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||||||||||| ||| || | |||| |||||||| | |||||||||    
T  4638340 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaacc 4638241  T
Q  111 gaaccaaacaaggttggatattttttcggtttgg 144  Q
    ||||| |||||||| |||||||||||||||||||    
T  4638240 gaaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 13852276 - 13852453
Alignment:
Q  18 gattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 117  Q
    |||||||||||||||||||| |||||| |||| |||||  |||| |||||||||||||||||||||| |||| ||| |||| |||||||||||||| |||    
T  13852276 gattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaa 13852375  T
Q  118 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 195  Q
    |||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852376 acaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 29109214 - 29109348
Alignment:
Q  63 ccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcgg 162  Q
    |||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||| |    
T  29109214 ccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttcagtttggttcggtttggattttcag 29109313  T
Q  163 tttcattggttttattcgaaccacttaaaccccta 197  Q
    ||||||  ||||| | ||||||||||| |||||||    
T  29109314 tttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 3919857 - 3920029
Alignment:
Q  13 catcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 112  Q
    |||||| | ||||||||||||    ||||||| |||| |||||| | || |||||||||||||||||||||| | || |||||| | |||||  |||| |    
T  3919857 catcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaa 3919956  T
Q  113 accaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 185  Q
    ||||||||| || | ||  |||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919957 accaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  78 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 177  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  178 tcgaaccacttaaaccccta 197  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 36009345 - 36009278
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagat 78  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||| ||||| ||||||||||||||||    
T  36009345 atcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 152  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 5526347 - 5526225
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| ||||| |||    
T  5526347 aaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgattt 5526249  T
Q  166 cattggttttattcgaaccactta 189  Q
    | |||||||| | || ||||||||    
T  5526248 ctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  111 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 198  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 38607141 - 38607020
Alignment:
Q  22 ggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 121  Q
    ||||||||||||| |  |||||| |||| ||||| || || || |||||||| || || |||| |||| |||||| | |||||  || ||||| ||||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaac-aaacaa 38607043  T
Q  122 ggttggatattttttcggtttgg 144  Q
    ||| |||||| ||||||||||||    
T  38607042 ggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 1844 - 1970
Alignment:
Q  11 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 110  Q
    |||||||||||||||||||||||||||  |||||||||| ||||| ||||| |||||||||| |||||| |||| |||| |||| ||| | |||||||||    
T  1844 atcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaacc 1943  T
Q  111 gaaccaaacaaggttggatattttttc 137  Q
    |||||||||||||| ||||||||||||    
T  1944 gaaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 7176534 - 7176662
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   |||||||||    
T  7176534 aaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttcggttt 7176633  T
Q  166 cattggttttattcgaaccacttaaaccc 194  Q
    ||| |||||| | |||| |||||| ||||    
T  7176634 catcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 23301542 - 23301441
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggttt 165  Q
    |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||||||||    
T  23301542 aaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaattttcggttt 23301443  T
Q  166 ca 167  Q
    ||    
T  23301442 ca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  107 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 23300552 - 23300455
Alignment:
Q  70 aaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttca 167  Q
    |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||||||||||||||||| | |||||||||||    
T  23300552 aaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcggtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  40 atctcgaaataaaaaatcatgagccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 139  Q
    |||||||||| |||||||| || || | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  140 ttt 142  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  66 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 164  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  165 tcattggttttattcgaaccact 187  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  107 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 197  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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