View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_458 (Length: 230)

Name: NF9288A_low_458
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_458
NF9288A_low_458
[»] chr6 (1 HSPs)
chr6 (1-87)||(22082975-22083061)
[»] chr3 (4 HSPs)
chr3 (1-87)||(19768282-19768368)
chr3 (146-217)||(19768427-19768498)
chr3 (149-217)||(29199942-29200010)
chr3 (5-83)||(29199801-29199879)
[»] chr4 (2 HSPs)
chr4 (1-87)||(37616919-37617005)
chr4 (146-217)||(37616789-37616860)
[»] chr1 (2 HSPs)
chr1 (15-87)||(51389585-51389657)
chr1 (146-209)||(51389463-51389526)
[»] chr8 (2 HSPs)
chr8 (151-209)||(770534-770592)
chr8 (1-60)||(770404-770463)
[»] chr7 (1 HSPs)
chr7 (1-87)||(32663022-32663108)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22082975 - 22083061
Alignment:
Q  1 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22082975 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 22083061  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19768282 - 19768368
Alignment:
Q  1 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19768282 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 19768368  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 19768427 - 19768498
Alignment:
Q  146 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768427 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 19768498  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 29199942 - 29200010
Alignment:
Q  149 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199942 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 29200010  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 29199801 - 29199879
Alignment:
Q  5 aattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagg 83  Q
    ||||||||||||||| |||||  |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  29199801 aattttactctttgcgtaatcgttgttgcatgcttgaatccatgactctcttctttaggacttctcatgtataaatagg 29199879  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 37617005 - 37616919
Alignment:
Q  1 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37617005 attcaattttactctttgcctaatttgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 37616919  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 37616860 - 37616789
Alignment:
Q  146 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616860 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 37616789  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 51389657 - 51389585
Alignment:
Q  15 tttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 87  Q
    |||||||| ||  |||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  51389657 tttgcctattcattgttgcatgcttgaatccatgaccctcttctttaggacttctcatgtataaatagggacc 51389585  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 51389526 - 51389463
Alignment:
Q  146 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 209  Q
    |||| ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  51389526 ctctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct 51389463  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 770534 - 770592
Alignment:
Q  151 tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 209  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  770534 tctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct 770592  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 770404 - 770463
Alignment:
Q  1 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt 60  Q
    ||||||||||||| |||||||||||  |||||||||  |||||||||| | |||||||||    
T  770404 attcaattttactatttgcctaatcgttgttgcatgtttgaatccatgaccctcttcttt 770463  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32663022 - 32663108
Alignment:
Q  1 attcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 87  Q
    ||||| ||||||||||| || ||||  |||||||||| ||||| |||  | ||||| ||| ||||||||||||||||||||||||||    
T  32663022 attcagttttactcttttcccaatcattgttgcatgcgtgaattcattaccctcttgtttaggacttctcatgtataaatagggacc 32663108  T

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