View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_473 (Length: 230)
Name: NF9288A_low_473
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_473 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20426890 - 20426667
Alignment:
| Q |
1 |
aaaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatattaaaacgcctcccataacacccaagtttttcagtctcc |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20426890 |
aaaaaccaattactgatttattcctccaatcgaaacaaggcttttcttgtaaattgcaatataaaaacgcctcccataacacccaagtttttcagtctcc |
20426791 |
T |
|
| Q |
101 |
tgggtatgtaaatcaaaacagactagctgaccatctttttgttttaggaaaatatcaccgttcttccccactccaataagacgctcaatgtagagcaatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20426790 |
tgggtatgtaaatcaaaacagactagctgaccatctttttatattaggaaaatatcaccgttcatccccactccaataagacgctcaatgtagagcaatg |
20426691 |
T |
|
| Q |
201 |
gtccaacaacaaagagtttggtcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
20426690 |
gtccaacaacaaagagtttggtcc |
20426667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15337944 - 15338170
Alignment:
| Q |
1 |
aaaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatatta---aaacgc-ctcccataacacccaagtttttcagt |
96 |
Q |
| |
|
|||||||||||| ||||||||||| |||| || | || ||||||||||||||||||| || | ||| || |||| ||||||| ||||| |||||| |
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| T |
15337944 |
aaaaaccaattaatgatttattccaccaattgagagaaaacttttcttgtaaattgcaagatcataaaaatgcgctcctttaacacc-aagttcttcagt |
15338042 |
T |
|
| Q |
97 |
ctcctgggtatgtaaatcaaaacagactagctgaccatctttttgttttaggaaaatatcaccgttcttccccactccaataagacgctcaatgtagagc |
196 |
Q |
| |
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|| ||| ||| |||| ||||||||||||| ||||||||||| || | ||| |||||||| ||||| ||| ||||||||||||| |||||||| | |
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| T |
15338043 |
cttctgagtacttaaactgaaacagactagcttaccatcttttttttggaagaatatatcaccattctttcccgctccaataagacgatcaatgtaagga |
15338142 |
T |
|
| Q |
197 |
aatggtccaacaacaaagagtttggtcc |
224 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |
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| T |
15338143 |
agtggtccaacaacaaatagtttagtcc |
15338170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15427009 - 15427235
Alignment:
| Q |
1 |
aaaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatatta---aaacgc-ctcccataacacccaagtttttcagt |
96 |
Q |
| |
|
|||||||||||| ||||||||||| |||| || | || ||||||||||||||||||| || | ||| || |||| ||||||| ||||| |||||| |
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| T |
15427009 |
aaaaaccaattaatgatttattccaccaattgagagaaaacttttcttgtaaattgcaagatcataaaaatgcgctcctttaacacc-aagttcttcagt |
15427107 |
T |
|
| Q |
97 |
ctcctgggtatgtaaatcaaaacagactagctgaccatctttttgttttaggaaaatatcaccgttcttccccactccaataagacgctcaatgtagagc |
196 |
Q |
| |
|
|| ||| ||| |||| ||||||||||||| ||||||||||| || | ||| |||||||| ||||| ||| ||||||||||||| |||||||| | |
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|
| T |
15427108 |
cttctgagtacttaaactgaaacagactagcttaccatcttttttttggaagaatatatcaccattctttcccgctccaataagacgatcaatgtaagga |
15427207 |
T |
|
| Q |
197 |
aatggtccaacaacaaagagtttggtcc |
224 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |
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|
| T |
15427208 |
agtggtccaacaacaaatagtttagtcc |
15427235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15518313 - 15518539
Alignment:
| Q |
1 |
aaaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatatta---aaacgc-ctcccataacacccaagtttttcagt |
96 |
Q |
| |
|
|||||||||||| ||||||||||| |||| || | || ||||||||||||||||||| || | ||| || |||| ||||||| ||||| |||||| |
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|
| T |
15518313 |
aaaaaccaattaatgatttattccaccaattgagagaaaacttttcttgtaaattgcaagatcataaaaatgcgctcctttaacacc-aagttcttcagt |
15518411 |
T |
|
| Q |
97 |
ctcctgggtatgtaaatcaaaacagactagctgaccatctttttgttttaggaaaatatcaccgttcttccccactccaataagacgctcaatgtagagc |
196 |
Q |
| |
|
|| ||| ||| |||| ||||||||||||| ||||||||||| || | ||| |||||||| ||||| ||| ||||||||||||| |||||||| | |
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|
| T |
15518412 |
cttctgagtacttaaactgaaacagactagcttaccatcttttttttggaagaatatatcaccattctttcccgctccaataagacgatcaatgtaagga |
15518511 |
T |
|
| Q |
197 |
aatggtccaacaacaaagagtttggtcc |
224 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |
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|
| T |
15518512 |
agtggtccaacaacaaatagtttagtcc |
15518539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 44937765 - 44937818
Alignment:
| Q |
171 |
ctccaataagacgctcaatgtagagcaatggtccaacaacaaagagtttggtcc |
224 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||||||||||||||| |||| |
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|
| T |
44937765 |
ctccaataagacgctccatgtagggtagtggtccaacaacaaagagtttagtcc |
44937818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 44918282 - 44918342
Alignment:
| Q |
2 |
aaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatat |
62 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||| | ||| |||||||||||||||||||||| |
|
|
| T |
44918282 |
aaaacgaattacttatttattccaccaaccgagagaagacttttcttgtaaattgcaatat |
44918342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44912316 - 44912379
Alignment:
| Q |
1 |
aaaaaccaattactgatttattcctccaaacgaaacaaggcttttcttgtaaattgcaatatta |
64 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| ||| | ||| | |||||||||||||||||||||| |
|
|
| T |
44912316 |
aaaatccaattacttatttattccgccaagcgagagaagacctttcttgtaaattgcaatatta |
44912379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 51870192 - 51870058
Alignment:
| Q |
85 |
aagtttttcagtctcctgggtatgtaaatcaaaacagactagctgaccatctttttgttttaggaaaatatcaccgttcttccccactccaataagacgc |
184 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| | ||||| ||||||||| ||| || | || ||||||| |||||| || ||||||||||||| |
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|
| T |
51870192 |
aagttcttcagtcttttgggtacttaaatcaaaatacactagttgaccatctattttttggaacaatatatcacagttctttcctgctccaataagacga |
51870093 |
T |
|
| Q |
185 |
tcaatgtagagcaatggtccaacaacaaagagttt |
219 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||| |
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|
| T |
51870092 |
tcaatgtaggaaaatgacccaacaataaagagttt |
51870058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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